Repositories list

• taxprofiler

  Public
  Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data

  Nextflow

  •

  MIT License

  •34•0•0•0•Updated Sep 29, 2024Sep 29, 2024

• qiime2-srf

  Public
  Singularity recipe files for QIIME 2 (https://docs.qiime2.org/)

  Roff

  •0•0•0•0•Updated Aug 28, 2024Aug 28, 2024

• GraffiTE

  Public
  GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered polymorphisms in read sets using genome-graphs.

  R

  •

  Other

  •5•0•0•0•Updated Jul 12, 2024Jul 12, 2024

• angsd-srf

  Public
  Singularity recipe files for angsd (https://github.com/ANGSD/angsd)

  0•0•0•0•Updated Oct 24, 2023Oct 24, 2023

• apsimx-srf

  Public
  Singularity recipe files for ApsimX (https://github.com/APSIMInitiative/ApsimX)

  4•3•0•0•Updated Oct 8, 2023Oct 8, 2023

• easybuild-easyconfigs

  Public
  A collection of easyconfig files that describe which software to build using which build options with EasyBuild.

  Python

  •

  GNU General Public License v2.0

  •701•0•0•0•Updated Aug 31, 2023Aug 31, 2023

• gemoma-srf

  Public
  Apptainer recipe files for GeMoMa (http://www.jstacs.de/index.php/GeMoMa)

  Roff

  •0•0•0•0•Updated Aug 25, 2023Aug 25, 2023

• vg-srf

  Public
  Singularity recipe files for vg (https://github.com/vgteam/vg)

  Roff

  •0•0•0•0•Updated Jul 27, 2023Jul 27, 2023

• masurca-srf

  Public
  Singularity recipe files for masurca (https://github.com/alekseyzimin/masurca)

  1•0•0•0•Updated Apr 19, 2023Apr 19, 2023

• cactus-srf

  Public
  Singularity recipe files for cactus (https://github.com/ComparativeGenomicsToolkit/cactus)

  Roff

  •0•0•0•0•Updated Mar 20, 2023Mar 20, 2023

• README

  Public
  Guidelines and license terms for Singularity Recipe Files repositories in this GitHub organization

  Shell

  •

  MIT License

  •0•3•1•0•Updated Mar 16, 2023Mar 16, 2023

• guppy-srf

  Public
  Singularity recipe files for guppy (https://community.nanoporetech.com/protocols/Guppy-protocol/v/gpb_2003_v1_revm_14dec2018)

  Roff

  •1•0•1•0•Updated Mar 14, 2023Mar 14, 2023

• multiqc-srf

  Public
  Singularity recipe files for multiqc (https://github.com/ewels/MultiQC)

  Roff

  •1•0•0•0•Updated Mar 7, 2023Mar 7, 2023

• rstudio-docker-products

  Public
  Docker images for RStudio Professional Products

  Just

  •

  MIT License

  •55•0•0•0•Updated Mar 6, 2023Mar 6, 2023

• pggb-srf

  Public
  Singularity recipe files for pggb (https://github.com/pangenome/pggb)

  Roff

  •0•0•0•0•Updated Feb 26, 2023Feb 26, 2023

• gromacs-srf

  Public
  Singularity recipe files for GROMACS (http://www.gromacs.org/)

  Roff

  •0•1•0•0•Updated Feb 1, 2023Feb 1, 2023

• fastqpuri-srf

  Public
  Singularity recipe files for FastqPuri (https://github.com/jengelmann/FastqPuri)

  0•0•0•0•Updated Jan 23, 2023Jan 23, 2023

• sortmerna-srf

  Public
  Singularity recipe files for sortmerna (https://github.com/biocore/sortmerna)

  Roff

  •0•0•0•0•Updated Jan 17, 2023Jan 17, 2023

• dvc-srf

  Public
  Singularity recipe files for dvc (https://github.com/iterative/dvc)

  Roff

  •3•0•0•0•Updated Jan 9, 2023Jan 9, 2023

• imagemagick-srf

  Public
  Singularity recipe files for ImageMagick (imagemagick.org)

  0•0•0•0•Updated Nov 23, 2022Nov 23, 2022

• 3d-dna-srf

  Public
  Singularity recipe files for 3D DNA (https://github.com/theaidenlab/3d-dna)

  0•0•0•0•Updated Nov 23, 2022Nov 23, 2022

• gatk-srf

  Public
  Singularity recipe files for gatk (https://github.com/broadinstitute/gatk)

  Roff

  •0•0•0•0•Updated Aug 4, 2022Aug 4, 2022

• mzmine3-srf

  Public
  Singularity recipe files for mzmine3 (https://github.com/mzmine/mzmine3)

  0•0•0•0•Updated Aug 3, 2022Aug 3, 2022

• kraken-biom-srf

  Public
  Singularity recipe files for kraken-biom (https://github.com/smdabdoub/kraken-biom)

  0•0•0•0•Updated Aug 2, 2022Aug 2, 2022

• glnexus-srf

  Public
  Singularity recipe files for glnexus (https://github.com/dnanexus-rnd/GLnexus)

  Roff

  •0•0•0•0•Updated Aug 2, 2022Aug 2, 2022

• deepvariant-srf

  Public
  Singularity recipe files for DeepVariant (https://github.com/google/deepvariant)

  0•0•0•0•Updated Jul 26, 2022Jul 26, 2022

• nbviewer

  Public
  nbconvert as a web service: Render Jupyter Notebooks as static web pages

  Python

  •

  Other

  •549•0•0•0•Updated May 18, 2022May 18, 2022

• groimp-srf

  Public
  Singularity recipe files for GroIMP (http://www.grogra.de/software/groimp)

  1•0•0•0•Updated May 2, 2022May 2, 2022

• lja-srf

  Public
  Singularity recipe files for LJA (https://github.com/AntonBankevich/LJA)

  Roff

  •0•0•0•0•Updated Apr 27, 2022Apr 27, 2022

• trinityrnaseq-srf

  Public
  Singularity recipe files for trinityrnaseq (https://github.com/trinityrnaseq/trinityrnaseq)

  Roff

  •0•0•0•0•Updated Mar 31, 2022Mar 31, 2022