Graphql: Submit Workflow Execution

[JeffreyThiessen]

What does this PR do and why?

Describe in detail what your merge request does and why.

• Added new graphql mutation SubmitWorkflowExecution which submits a workflow execution / pipeline.
• Added a new Validator for WorkflowExecution objects, which ensures samplesheet params attachments are formatted correctly.
  • This is not an issue when workflow executions are submitted via the Web UI, but graphql accepts any text so an invalid attachment could cause problems in the pipeline if not validated beforehand.

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How to set up and validate locally

Numbered steps to set up and validate the change are strongly suggested.

Get some data to use in a submission

query getProject{
  project(fullPath: "bacillus/bacillus-anthracis/outbreak-2022") {
    id
    name
    path
    samples(first:1){
      nodes{
        name
        id
        puid
        attachments{
          nodes{
            filename
            id
          }
        }
      }
    }
  }
}

Use the data returned from the previous step to populate the following submission mutation

mutation submitWE {
  submitWorkflowExecution (input:{
    name:"My Workflow from graphql 5"
    projectId: "gid://irida/Project/13d4c370-c707-4afa-8fe2-a26719508c02"
    updateSamples: false
    emailNotification: false
    workflowName: "phac-nml/iridanextexample"
    workflowVersion:"1.0.3"
    workflowParams: {
      assembler: "stub",
      random_seed: 1,
      project_name: "assembly"
    }
    workflowType: "NFL"
    workflowTypeVersion:"DSL2"
    workflowEngine:"nextflow"
    workflowEngineVersion: "23.10.0"
    workflowEngineParameters: [
      {
        key:"-r",
        value:"1.0.3"
      }
    ]
    workflowUrl: "https://github.com/phac-nml/iridanextexample"
    samplesWorkflowExecutionsAttributes:[
      {
        sample_id:"gid://irida/Sample/e978e898-f5f6-44a1-934a-418392d4c532"
        samplesheet_params:{
          sample: "INXT_SAM_AYMK34F2FG",
          fastq_1:"gid://irida/Attachment/dd4470cb-71b2-4d75-accf-f6954cc4c922",
          fastq_2:"gid://irida/Attachment/8299fc62-66fc-4915-959e-f4f97d51b061"
        }
      }
    ]
  }){
    workflowExecution{
      name
      id
    }
    errors{
      message
      path
    }
  }
}

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