Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Anglo_Saxon_Project #104

Merged
merged 33 commits into from
Oct 4, 2023
Merged

Anglo_Saxon_Project #104

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
33 commits
Select commit Hold shift + click to select a range
714b024
A draft janno file
93Boy Nov 9, 2022
1c59923
added genotype data
stschiff May 16, 2023
0a96e1e
added genotype data
stschiff May 16, 2023
25e81b0
removed quotes from janno file
stschiff May 30, 2023
b56f026
fixed janno-order to genotype data order
stschiff May 30, 2023
1f0db0d
group_name update,adding ssf
93Boy Jun 1, 2023
e5f23b5
Missing data added from 2016_SchiffelsNatureCommunications
93Boy Jul 7, 2023
cfe9f77
removed quotations from Gretzinger-Janno file
stschiff Aug 11, 2023
37ca571
started filling back EAS003
stschiff Aug 11, 2023
eb950b8
continued with EAS003
stschiff Aug 11, 2023
8384a9c
added endog. DNA to EAS003
stschiff Aug 11, 2023
4cb3b37
changes to janno information and bib text added
93Boy Aug 23, 2023
b63f22d
quotes removed, .yml added
93Boy Aug 26, 2023
94a8664
lots of table-cleanup in janno
stschiff Sep 1, 2023
013b01c
adapted some group names in janno
stschiff Sep 1, 2023
dfdf958
fixed janno-order
stschiff Sep 1, 2023
2f6f743
fixed Häven spelling
stschiff Sep 1, 2023
b5ca3f8
fixed discrepant group names between ind and janno
stschiff Sep 1, 2023
52821fb
updated yml, added README and CHANGELOG
stschiff Sep 1, 2023
cc57e19
some more edits to fix validation errors
stschiff Sep 1, 2023
306d808
validate passes
stschiff Sep 1, 2023
a737855
Merge branch 'Anglo_sax_draft' of github.com:poseidon-framework/commu…
stschiff Sep 4, 2023
67e7a6a
aligned pop-names
stschiff Sep 4, 2023
0d03d03
removed dupliate individual, converted to PLINK
stschiff Sep 4, 2023
0b61723
added duplicates
stschiff Sep 4, 2023
212d72c
fixed column-misalignment
stschiff Sep 4, 2023
9959eb2
adapted group field to some Oakington samples that are WGS duplicates
stschiff Sep 4, 2023
cdab216
fixed group name inconsistency
stschiff Sep 4, 2023
183d0c2
updated ssf and yml files
stschiff Oct 4, 2023
fcbc91e
Merge branch 'master' into Anglo_sax_draft
stschiff Oct 4, 2023
352eb91
removed redundant reference
stschiff Oct 4, 2023
a3ad78b
renamed ssf file and added to YAML
stschiff Oct 4, 2023
4d3dd90
updated SSF and checksums
stschiff Oct 4, 2023
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
3 changes: 3 additions & 0 deletions 2022_Gretzinger_AngloSaxons/2022_Gretzinger_AngloSaxons.bed
View file
Open in desktop

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

13 changes: 13 additions & 0 deletions 2022_Gretzinger_AngloSaxons/2022_Gretzinger_AngloSaxons.bib
View file
Open in desktop

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

3 changes: 3 additions & 0 deletions 2022_Gretzinger_AngloSaxons/2022_Gretzinger_AngloSaxons.bim
View file
Open in desktop

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

487 changes: 487 additions & 0 deletions 2022_Gretzinger_AngloSaxons/2022_Gretzinger_AngloSaxons.fam
View file
Open in desktop

Large diffs are not rendered by default.

488 changes: 488 additions & 0 deletions 2022_Gretzinger_AngloSaxons/2022_Gretzinger_AngloSaxons.janno
View file
Open in desktop

Large diffs are not rendered by default.

480 changes: 480 additions & 0 deletions 2022_Gretzinger_AngloSaxons/2022_Gretzinger_AngloSaxons.ssf
View file
Open in desktop

Large diffs are not rendered by default.

1 change: 1 addition & 0 deletions 2022_Gretzinger_AngloSaxons/CHANGELOG.md
View file
Open in desktop

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

28 changes: 28 additions & 0 deletions 2022_Gretzinger_AngloSaxons/POSEIDON.yml
View file
Open in desktop

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

9 changes: 9 additions & 0 deletions 2022_Gretzinger_AngloSaxons/README.md
View file
Open in desktop

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.