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Refactor auto factory#1

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psmyth94 wants to merge 22 commits intomainpsmyth94/biofit:mainfrom refactor-auto-factorypsmyth94/biofit:refactor-auto-factoryCopy head branch name to clipboard

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Commits on Nov 22, 2024

• feat(docs): add detailed guide for creating processors

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  psmyth94

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  5210f6e

• feat: add experiment registration and mapping

  Show description for 26e723e
  psmyth94

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  26e723e

• feat: add new configurations for OTU and Metagenomics

  Show description for 79671ea
  psmyth94

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  79671ea

• refactor: rename dataset_name to experiment_name

  Show description for b6c376c
  psmyth94

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  b6c376c

• refactor(tests): remove obsolete auto tests

  Show description for 3192f3a
  psmyth94

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  3192f3a

• refactor(tests): update config_class to _config_class

  Show description for 103379e
  psmyth94

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  103379e

• refactor: rename dataset to experiment

  Show description for b1222a2
  psmyth94

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  b1222a2

• refactor(tests): add auto plotting and preprocessing tests

  Show description for 1b11a5e
  psmyth94

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  1b11a5e

• refactor: rename genomicsml_module to biofit_module

  Show description for 170569c
  psmyth94

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  170569c

• refactor(plotting_auto): simplify type checks and naming

  Show description for e9a29de
  psmyth94

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  e9a29de

• refactor(processing): rename dataset_name to experiment_name

  Show description for 94319b6
  psmyth94

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  94319b6

• refactor(processing): improve input column handling

  Show description for 6cf11fb
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  6cf11fb

• refactor(processing): rename dataset_name to experiment_name

  Show description for 7186f68
  psmyth94

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  7186f68

• refactor(processing): enforce fit method implementation

  Show description for 38eea06
  psmyth94

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  38eea06

• refactor(processing): update test cases for consistency

  Show description for bc741b7
  psmyth94

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  bc741b7

• refactor(tests): update auto plotting test cases

  Show description for 4583bb5
  psmyth94

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  4583bb5

• refactor(tests): remove unused omic dataset functions

  Show description for 5463249
  psmyth94

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  5463249

Commits on Dec 12, 2024

• refactor: rename methods and add unregister functions

  Show description for ebfc319
  psmyth94

  committed
  ebfc319

• test: add unit tests for PlotterPipeline class

  Show description for 8f1d5bc
  psmyth94

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  8f1d5bc

Commits on Dec 15, 2024

• feat: add fit_transform method to PCoAFeatureExtractor

  Show description for 10b8717
  psmyth94

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  10b8717

• fix: update specificity check and PCoAFeatureExtractor

  Show description for 5e91f1c
  psmyth94

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  5e91f1c

• refactor: remove unused os import in test_eval.py

  Show description for 297c3f7
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  297c3f7