StarBeast3 v1.1.9

StarBeast3 v1.1.9

• Fixed a bug where the PopSizeGibbsSampler operator would occassionally throw an exception due to numerical issues or negative branch lengths

StarBeast3 v1.1.8

New release:

• Tip dates are now being sampled properly. Previously, the Tip Date Random Walk operators were not moving the old gene nodes with the calibrated species tree node. This would lead to negative branch lengths. But now, the trees are moving together. In order to use these new operators when sampling tip dates, please use the new 'StarBeast3 MRCA Prior', rather than the standard 'MRCA Prior', and set tipsOnly to true.
• The Yule Skyline nodel is now compatible with StarBeast3. Please update the BICEPS package to use this tree prior

StarBeast3 v1.1.7

New features in StarBeast3 v1.1.7:

• When specifying the initial species tree, the gene trees will initialise within their respective species tree nodes, rather than all at the root
• When using MRCA Prior calibrations, the initial tree will be valid
• Lower bound can be placed on branch rates

Starbeast3 v1.1.6

StarBeast3 v1.1.6 allows the initial species tree to be fixed, according to a newick string

StarBeast3 v1.1.5

StarBeast3 v1.1.5: fixes a bug which prevented -sampleFromPrior from working properly

StarBeast3 v1.1.4

StarBeast3 v1.1.4 allows the editing of Tip Dates in beauti. The sample of each gene is assumed to be the same as its species.

StarBeast3 v.1.1.3

Compatability with bModelTest and OBAMA site models

StarBeast3 v.1.1.2

Added gene clock model tab to the beauti template so that individual clock rates can be estimated/fixed

StarBeast3 v1.1.1

Temporary reversion of new gene clock model beauti template

StarBeast3

BEAST v2.7.0 compatible