delete forgotten .view() function and change version

scilus · Oct 30, 2024 · b041bd2 · b041bd2
1 parent d2c9da3
commit b041bd2
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Showing 3 changed files with 3 additions and 4 deletions.
diff --git a/modules/nf-neuro/segmentation/synthseg/main.nf b/modules/nf-neuro/segmentation/synthseg/main.nf
@@ -135,7 +135,7 @@ process SEGMENTATION_SYNTHSEG {
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":
-        Freesurfer: 7.4.1
+        Freesurfer: \$(mri_convert -version | grep "freesurfer" | sed -E 's/.* ([0-9]+\\.[0-9]+\\.[0-9]+).*/\\1/')
     END_VERSIONS
     """
 
@@ -163,7 +163,7 @@ process SEGMENTATION_SYNTHSEG {
 
     cat <<-END_VERSIONS > versions.yml
     "${task.process}":
-        Freesurfer: 7.4.1
+        Freesurfer: \$(mri_convert -version | grep "freesurfer" | sed -E 's/.* ([0-9]+\\.[0-9]+\\.[0-9]+).*/\\1/')
     END_VERSIONS
     """
 }
diff --git a/subworkflows/nf-neuro/anatomical_segmentation/main.nf b/subworkflows/nf-neuro/anatomical_segmentation/main.nf
@@ -21,7 +21,6 @@ workflow ANATOMICAL_SEGMENTATION {
         ch_versions = Channel.empty()
 
         if ( params.run_synthseg ) {
-            ch_fs_license.view()
             // ** Freesurfer synthseg segmentation ** //
             SEGMENTATION_SYNTHSEG (
                 ch_image

diff --git a/subworkflows/nf-neuro/anatomical_segmentation/tests/main.nf.test.snap b/subworkflows/nf-neuro/anatomical_segmentation/tests/main.nf.test.snap
@@ -135,7 +135,7 @@
             "nf-test": "0.9.0",
             "nextflow": "24.04.4"
         },
-        "timestamp": "2024-10-12T04:24:53.878475873"
+        "timestamp": "2024-10-30T16:59:25.733839079"
     },
     "anatomical_segmentation - fslfast": {
         "content": [