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Pull requests: scverse/anndata

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Pull requests list

[pre-commit.ci] pre-commit autoupdate
#1810 opened Dec 23, 2024 by pre-commit-ci bot Loading…
1
(chore): adopt scientific python deprecation schedule
#1768 opened Nov 15, 2024 by ilan-gold • Draft
3 tasks
0.12.0
(chore): tighten spmatrix usage skip-gpu-ci topic: api type: sparse 🫥
#1767 opened Nov 14, 2024 by ilan-gold Loading…
2 of 3 tasks
0.12.0
1
3
(chore): remove anndata.read skip-gpu-ci
#1766 opened Nov 14, 2024 by ilan-gold Loading…
2 of 3 tasks
0.12.0
1
2
(feat): support for zarr-python>=3.0.0b0
#1726 opened Oct 21, 2024 by ilan-gold • Draft
3 tasks
2
dask-version
#1711 opened Oct 14, 2024 by Intron7 Loading…
1
Unify X and layers
#1707 opened Oct 9, 2024 by flying-sheep • Draft
1 of 5 tasks
0.12.0
1
@flying-sheep
1
Deprecate positional boolean arguments skip-gpu-ci
#1694 opened Sep 24, 2024 by flying-sheep Loading… 0.12.0
@flying-sheep
2
(feat): custom reopen with read_elem_as_dask for remote h5ad benchmark skip-gpu-ci
#1665 opened Sep 4, 2024 by ilan-gold • Draft
1 of 3 tasks
0.12.0
@ilan-gold
8
(chore): ensure views of anndata produce distinguishable view classes skip-gpu-ci
#1637 opened Sep 2, 2024 by ilan-gold • Draft
3 tasks
0.11.2
3
Chunked writing of h5py.Dataset and zarr.Array skip-gpu-ci
#1624 opened Aug 28, 2024 by ivirshup Loading…
1 of 4 tasks
0.11.2
1
15
(feat): [WIP] support physical quantities via Pint
#1481 opened Apr 24, 2024 by mruffalo • Draft
1 of 3 tasks
11
1417 - implicitly modify to str dtype on check
#1418 opened Mar 12, 2024 by jday1 • Draft
1 of 3 tasks
1
1
Update to_df to include metadata
#1400 opened Mar 6, 2024 by WeilerP Loading…
1
3
Gpu ci with conda cuda12.3 run-gpu-ci
#1360 opened Feb 7, 2024 by ivirshup • Draft
3
[WIP] adding an option to read file from s3
#1322 opened Jan 19, 2024 by djarecka Loading…
1 of 3 tasks
1
7
Use standard version API
#1318 opened Jan 18, 2024 by flying-sheep Loading…
3 tasks done
1
1
Fix positional boolean APIs
#1285 opened Jan 5, 2024 by flying-sheep • Draft
3 tasks
1
(feat): read_lazy for whole AnnData lazy-loading + xarray reading + read_elem_as_dask -> read_elem_lazy skip-gpu-ci
#1247 opened Nov 30, 2023 by ilan-gold Loading…
3 tasks done
0.12.0
3
@ilan-gold
195
Allow for specifying a tensor device in AnnLoader
#1240 opened Nov 21, 2023 by austinv11 Loading…
2 of 3 tasks
1
Basic OOC guide docs topic: io
#1163 opened Oct 5, 2023 by ivirshup • Draft
1 of 9 tasks
1
1
Add concat-on-disk tutorial docs skip-gpu-ci topic: backed topic: combining
#1157 opened Oct 4, 2023 by ivirshup • Draft
3 tasks
1
Fix view behavior for AwkwardArrays
#1070 opened Jul 24, 2023 by grst Loading…
2 of 3 tasks
1
20
Serialize Nones enhancement skip-gpu-ci topic: io
#999 opened Jun 7, 2023 by flying-sheep Loading…
3 tasks done
0.12.0
1
@flying-sheep
6
lazy dataframes in .obs and .var with backed="r" mode
#983 opened Apr 16, 2023 by gszep • Draft
1
1
ProTip! Exclude everything labeled bug with -label:bug.