Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Refactor group_abundance #463

Draft
wants to merge 2 commits into
base: main
Choose a base branch
from
Draft

Refactor group_abundance #463

wants to merge 2 commits into from

Conversation

grst
Copy link
Collaborator

@grst grst commented Nov 8, 2023

Closes #232
Closes #452

I fixed #452 by computing chain_qc values also for cells not in the AIRR modality and noticed that this required updates to the plotting code as well. So best tackled together with #232.

  • CHANGELOG.md updated
  • Tests added (For bug fixes or new features)
  • Tutorial updated (if necessary)

Copy link

codecov bot commented Nov 8, 2023

Codecov Report

Attention: 1 lines in your changes are missing coverage. Please review.

Comparison is base (84f390f) 80.50% compared to head (7859288) 80.51%.

Files Patch % Lines
src/scirpy/tl/_chain_qc.py 90.90% 1 Missing ⚠️
Additional details and impacted files
@@           Coverage Diff           @@
##             main     #463   +/-   ##
=======================================
  Coverage   80.50%   80.51%           
=======================================
  Files          49       49           
  Lines        4012     4019    +7     
=======================================
+ Hits         3230     3236    +6     
- Misses        782      783    +1     

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

ir.tl.chain_qc doesn't mark cells with no IR Refactoring group_abundance.
1 participant