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Mutational load function (SHM)#536

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MKanetscheider wants to merge 24 commits intoscverse:mainscverse/scirpy:mainfrom MKanetscheider:mutational_loadMKanetscheider/scirpy:mutational_loadCopy head branch name to clipboard

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Commits on Aug 9, 2024

• Added mutational_load function to calculate differences between sequence and germline alignment

  MKanetscheider

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• [pre-commit.ci] auto fixes from pre-commit.com hooks

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Commits on Aug 13, 2024

• Merge branch 'scverse:main' into mutational_load

  MKanetscheider

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  4b020b6

Commits on Aug 15, 2024

• Rewrote mutational_load function based on previous feedback and added function to api.rst

  MKanetscheider

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  56a8594

• [pre-commit.ci] auto fixes from pre-commit.com hooks

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• Fixed an issue with pre-commit

  MKanetscheider

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• Merge branch 'mutational_load' of https://github.com/MKanetscheider/scirpy into mutational_load

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• [pre-commit.ci] auto fixes from pre-commit.com hooks

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Commits on Aug 18, 2024

• Further optimized mutational_load function and formating of docstring documentation

  MKanetscheider

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  a416e06

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Commits on Aug 20, 2024

• Fixed small issues with the code layout as suggested by grst

  MKanetscheider

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  9793062

Commits on Aug 26, 2024

• Merge branch 'scverse:main' into mutational_load

  MKanetscheider

  authored
  d12f7b5

• Merge branch 'mutational_load' of https://github.com/MKanetscheider/scirpy into mutational_load

  MKanetscheider

  committed
  906df48

Commits on Aug 29, 2024

• Added a first beta-test case, which revealed some bugs that were also fixed

  MKanetscheider

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• [pre-commit.ci] auto fixes from pre-commit.com hooks

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• Specified 'except' condition

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• Merge branch 'mutational_load' of https://github.com/MKanetscheider/scirpy into mutational_load

  MKanetscheider

  committed
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Commits on Aug 30, 2024

• Merge branch 'main' into mutational_load

  MKanetscheider

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• [pre-commit.ci] auto fixes from pre-commit.com hooks

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Commits on Oct 15, 2024

• Merge branch 'main' into mutational_load

  MKanetscheider

  authored
  e662e36

Commits on Oct 17, 2024

• Add notebook section about somatic hypermutation

  grst

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Commits on Nov 20, 2024

• Merge branch 'main' into mutational_load

  grst

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• Update SHM description text in tutorial

  grst

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Commits on Nov 24, 2024

• Merge branch 'main' into mutational_load

  grst

  authored
  42f79da