Skip to content

Issues: scverse/scvi-tools

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

53 Open 981 Closed
53 Open 981 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Training fails with mini-batch size of one sample bug
#3035 opened Oct 31, 2024 by LeonHafner
1
3
KeyError: 'setup_method_name'
#3029 opened Oct 24, 2024 by ramadatta
1
TOTALVI.train() Model training has an invalid value error bug
#3028 opened Oct 23, 2024 by raozuming
3
Inconsistency in covariate injection into layer bug
#3021 opened Oct 19, 2024 by Hrovatin
3
Support metric and loss loging on step enhancement
#3020 opened Oct 19, 2024 by Hrovatin
2
Support training from AnnCollection enhancement
#3018 opened Oct 17, 2024 by jacobkimmel
2
Fix custom dataloader registry enhancement P0
#2907 opened Jul 23, 2024 by canergen
1
@ori-kron-wis
2
Use explicit configs instead of kwargs enhancement
#2904 opened Jul 18, 2024 by martinkim0 scvi-tools 2.0
Jax version of VAEMixin enhancement good first issue jax P1
#2779 opened May 6, 2024 by justjhong
Consider non-jitting MRVI tests/long tests pytest flag backlog P2
#2774 opened May 2, 2024 by martinkim0
Training models with torch.Tensor input enhancement P1
#2736 opened Apr 22, 2024 by j-bac scvi-tools 1.2
@ori-kron-wis
4
Use TensorBoard as default logger enhancement good first issue P2
#2645 opened Apr 2, 2024 by martinkim0 scvi-tools 2.0
Mixed usage of n_samples_overall in get_normalized_expression P1
#2641 opened Apr 1, 2024 by martinkim0
2
torch.distributed.DistBackendError when training on multiple GPUs bug P0
#2635 opened Mar 28, 2024 by CytoLiorG scvi-tools 1.3
5
PyroModelGuideWarmup fails on GPU - probably need to be manually run before trainer.fit() bug P0
#2616 opened Mar 18, 2024 by vitkl
@canergen
4
Failing to train on multiple GPUs in jupyter notebook bug P1
#2602 opened Mar 6, 2024 by chem1kal1 scvi-tools 1.3
@martinkim0
4
Enable checkpointing with autotune good first issue P1
#2580 opened Feb 29, 2024 by martinkim0 scvi-tools 1.2
@martinkim0 @ori-kron-wis
Assess whether we should deprecate more scvi.data functions backlog enhancement
#2551 opened Feb 25, 2024 by martinkim0
Remove scvi.data.cellxgene P2
#2543 opened Feb 21, 2024 by martinkim0
@martinkim0
Consider adding tensor/array shape annotations with jaxtyping backlog
#2541 opened Feb 21, 2024 by martinkim0
1
Add support for NumPy 2 dependencies Pull requests that update a dependency file enhancement P0
#2390 opened Jan 11, 2024 by martinkim0
1
@martinkim0
Adding cycle consistency loss and VampPrior to scVI enhancement P1
#2383 opened Jan 9, 2024 by Hrovatin scvi-tools 1.3
1
23
multi-GPU vs. single GPU - scvi 1.1.x branch bug P0
#2364 opened Dec 8, 2023 by zhenxingjian scvi-tools 1.3
3
Implement conditional batch/layer normalization enhancement good first issue P1
#2349 opened Dec 6, 2023 by martinkim0 scvi-tools 1.3
@canergen
1
Separate out unit and integration tests CI/CD good first issue P2 tests
#2311 opened Oct 30, 2023 by martinkim0
@martinkim0
ProTip! Type g i on any issue or pull request to go back to the issue listing page.