Skip to content

Commit

Permalink
Merge pull request #83 from eseiler/doc/doxygen_awesome
Browse files Browse the repository at this point in the history
[DOC] Use doxygen-awesome
  • Loading branch information
eseiler authored Sep 7, 2023
2 parents 9e559b0 + 4d532d5 commit 86244b8
Show file tree
Hide file tree
Showing 10 changed files with 3,163 additions and 509 deletions.
157 changes: 157 additions & 0 deletions test/documentation/doxygen-awesome/doxygen-awesome-darkmode-toggle.js
Original file line number Diff line number Diff line change
@@ -0,0 +1,157 @@
/**
Doxygen Awesome
https://github.com/jothepro/doxygen-awesome-css
MIT License
Copyright (c) 2021 - 2023 jothepro
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction, including without limitation the rights
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
copies of the Software, and to permit persons to whom the Software is
furnished to do so, subject to the following conditions:
The above copyright notice and this permission notice shall be included in all
copies or substantial portions of the Software.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
SOFTWARE.
*/

class DoxygenAwesomeDarkModeToggle extends HTMLElement {
// SVG icons from https://fonts.google.com/icons
// Licensed under the Apache 2.0 license:
// https://www.apache.org/licenses/LICENSE-2.0.html
static lightModeIcon = `<svg xmlns="http://www.w3.org/2000/svg" enable-background="new 0 0 24 24" height="24px" viewBox="0 0 24 24" width="24px" fill="#FCBF00"><rect fill="none" height="24" width="24"/><circle cx="12" cy="12" opacity=".3" r="3"/><path d="M12,9c1.65,0,3,1.35,3,3s-1.35,3-3,3s-3-1.35-3-3S10.35,9,12,9 M12,7c-2.76,0-5,2.24-5,5s2.24,5,5,5s5-2.24,5-5 S14.76,7,12,7L12,7z M2,13l2,0c0.55,0,1-0.45,1-1s-0.45-1-1-1l-2,0c-0.55,0-1,0.45-1,1S1.45,13,2,13z M20,13l2,0c0.55,0,1-0.45,1-1 s-0.45-1-1-1l-2,0c-0.55,0-1,0.45-1,1S19.45,13,20,13z M11,2v2c0,0.55,0.45,1,1,1s1-0.45,1-1V2c0-0.55-0.45-1-1-1S11,1.45,11,2z M11,20v2c0,0.55,0.45,1,1,1s1-0.45,1-1v-2c0-0.55-0.45-1-1-1C11.45,19,11,19.45,11,20z M5.99,4.58c-0.39-0.39-1.03-0.39-1.41,0 c-0.39,0.39-0.39,1.03,0,1.41l1.06,1.06c0.39,0.39,1.03,0.39,1.41,0s0.39-1.03,0-1.41L5.99,4.58z M18.36,16.95 c-0.39-0.39-1.03-0.39-1.41,0c-0.39,0.39-0.39,1.03,0,1.41l1.06,1.06c0.39,0.39,1.03,0.39,1.41,0c0.39-0.39,0.39-1.03,0-1.41 L18.36,16.95z M19.42,5.99c0.39-0.39,0.39-1.03,0-1.41c-0.39-0.39-1.03-0.39-1.41,0l-1.06,1.06c-0.39,0.39-0.39,1.03,0,1.41 s1.03,0.39,1.41,0L19.42,5.99z M7.05,18.36c0.39-0.39,0.39-1.03,0-1.41c-0.39-0.39-1.03-0.39-1.41,0l-1.06,1.06 c-0.39,0.39-0.39,1.03,0,1.41s1.03,0.39,1.41,0L7.05,18.36z"/></svg>`
static darkModeIcon = `<svg xmlns="http://www.w3.org/2000/svg" enable-background="new 0 0 24 24" height="24px" viewBox="0 0 24 24" width="24px" fill="#FE9700"><rect fill="none" height="24" width="24"/><path d="M9.37,5.51C9.19,6.15,9.1,6.82,9.1,7.5c0,4.08,3.32,7.4,7.4,7.4c0.68,0,1.35-0.09,1.99-0.27 C17.45,17.19,14.93,19,12,19c-3.86,0-7-3.14-7-7C5,9.07,6.81,6.55,9.37,5.51z" opacity=".3"/><path d="M9.37,5.51C9.19,6.15,9.1,6.82,9.1,7.5c0,4.08,3.32,7.4,7.4,7.4c0.68,0,1.35-0.09,1.99-0.27C17.45,17.19,14.93,19,12,19 c-3.86,0-7-3.14-7-7C5,9.07,6.81,6.55,9.37,5.51z M12,3c-4.97,0-9,4.03-9,9s4.03,9,9,9s9-4.03,9-9c0-0.46-0.04-0.92-0.1-1.36 c-0.98,1.37-2.58,2.26-4.4,2.26c-2.98,0-5.4-2.42-5.4-5.4c0-1.81,0.89-3.42,2.26-4.4C12.92,3.04,12.46,3,12,3L12,3z"/></svg>`
static title = "Toggle Light/Dark Mode"

static prefersLightModeInDarkModeKey = "prefers-light-mode-in-dark-mode"
static prefersDarkModeInLightModeKey = "prefers-dark-mode-in-light-mode"

static _staticConstructor = function() {
DoxygenAwesomeDarkModeToggle.enableDarkMode(DoxygenAwesomeDarkModeToggle.userPreference)
// Update the color scheme when the browsers preference changes
// without user interaction on the website.
window.matchMedia('(prefers-color-scheme: dark)').addEventListener('change', event => {
DoxygenAwesomeDarkModeToggle.onSystemPreferenceChanged()
})
// Update the color scheme when the tab is made visible again.
// It is possible that the appearance was changed in another tab
// while this tab was in the background.
document.addEventListener("visibilitychange", visibilityState => {
if (document.visibilityState === 'visible') {
DoxygenAwesomeDarkModeToggle.onSystemPreferenceChanged()
}
});
}()

static init() {
$(function() {
$(document).ready(function() {
const toggleButton = document.createElement('doxygen-awesome-dark-mode-toggle')
toggleButton.title = DoxygenAwesomeDarkModeToggle.title
toggleButton.updateIcon()

window.matchMedia('(prefers-color-scheme: dark)').addEventListener('change', event => {
toggleButton.updateIcon()
})
document.addEventListener("visibilitychange", visibilityState => {
if (document.visibilityState === 'visible') {
toggleButton.updateIcon()
}
});

$(document).ready(function(){
document.getElementById("MSearchBox").parentNode.appendChild(toggleButton)
})
$(window).resize(function(){
document.getElementById("MSearchBox").parentNode.appendChild(toggleButton)
})
})
})
}

constructor() {
super();
this.onclick=this.toggleDarkMode
}

/**
* @returns `true` for dark-mode, `false` for light-mode system preference
*/
static get systemPreference() {
return window.matchMedia('(prefers-color-scheme: dark)').matches
}

/**
* @returns `true` for dark-mode, `false` for light-mode user preference
*/
static get userPreference() {
return (!DoxygenAwesomeDarkModeToggle.systemPreference && localStorage.getItem(DoxygenAwesomeDarkModeToggle.prefersDarkModeInLightModeKey)) ||
(DoxygenAwesomeDarkModeToggle.systemPreference && !localStorage.getItem(DoxygenAwesomeDarkModeToggle.prefersLightModeInDarkModeKey))
}

static set userPreference(userPreference) {
DoxygenAwesomeDarkModeToggle.darkModeEnabled = userPreference
if(!userPreference) {
if(DoxygenAwesomeDarkModeToggle.systemPreference) {
localStorage.setItem(DoxygenAwesomeDarkModeToggle.prefersLightModeInDarkModeKey, true)
} else {
localStorage.removeItem(DoxygenAwesomeDarkModeToggle.prefersDarkModeInLightModeKey)
}
} else {
if(!DoxygenAwesomeDarkModeToggle.systemPreference) {
localStorage.setItem(DoxygenAwesomeDarkModeToggle.prefersDarkModeInLightModeKey, true)
} else {
localStorage.removeItem(DoxygenAwesomeDarkModeToggle.prefersLightModeInDarkModeKey)
}
}
DoxygenAwesomeDarkModeToggle.onUserPreferenceChanged()
}

static enableDarkMode(enable) {
if(enable) {
DoxygenAwesomeDarkModeToggle.darkModeEnabled = true
document.documentElement.classList.add("dark-mode")
document.documentElement.classList.remove("light-mode")
} else {
DoxygenAwesomeDarkModeToggle.darkModeEnabled = false
document.documentElement.classList.remove("dark-mode")
document.documentElement.classList.add("light-mode")
}
}

static onSystemPreferenceChanged() {
DoxygenAwesomeDarkModeToggle.darkModeEnabled = DoxygenAwesomeDarkModeToggle.userPreference
DoxygenAwesomeDarkModeToggle.enableDarkMode(DoxygenAwesomeDarkModeToggle.darkModeEnabled)
}

static onUserPreferenceChanged() {
DoxygenAwesomeDarkModeToggle.enableDarkMode(DoxygenAwesomeDarkModeToggle.darkModeEnabled)
}

toggleDarkMode() {
DoxygenAwesomeDarkModeToggle.userPreference = !DoxygenAwesomeDarkModeToggle.userPreference
this.updateIcon()
}

updateIcon() {
if(DoxygenAwesomeDarkModeToggle.darkModeEnabled) {
this.innerHTML = DoxygenAwesomeDarkModeToggle.darkModeIcon
} else {
this.innerHTML = DoxygenAwesomeDarkModeToggle.lightModeIcon
}
}
}

customElements.define("doxygen-awesome-dark-mode-toggle", DoxygenAwesomeDarkModeToggle);
Original file line number Diff line number Diff line change
@@ -0,0 +1,85 @@
/**
Doxygen Awesome
https://github.com/jothepro/doxygen-awesome-css
MIT License
Copyright (c) 2022 - 2023 jothepro
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction, including without limitation the rights
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
copies of the Software, and to permit persons to whom the Software is
furnished to do so, subject to the following conditions:
The above copyright notice and this permission notice shall be included in all
copies or substantial portions of the Software.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
SOFTWARE.
*/

class DoxygenAwesomeFragmentCopyButton extends HTMLElement {
constructor() {
super();
this.onclick=this.copyContent
}
static title = "Copy to clipboard"
static copyIcon = `<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24" width="24" height="24"><path d="M0 0h24v24H0V0z" fill="none"/><path d="M16 1H4c-1.1 0-2 .9-2 2v14h2V3h12V1zm3 4H8c-1.1 0-2 .9-2 2v14c0 1.1.9 2 2 2h11c1.1 0 2-.9 2-2V7c0-1.1-.9-2-2-2zm0 16H8V7h11v14z"/></svg>`
static successIcon = `<svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24" width="24" height="24"><path d="M0 0h24v24H0V0z" fill="none"/><path d="M9 16.17L4.83 12l-1.42 1.41L9 19 21 7l-1.41-1.41L9 16.17z"/></svg>`
static successDuration = 980
static init() {
$(function() {
$(document).ready(function() {
if(navigator.clipboard) {
const fragments = document.getElementsByClassName("fragment")
for(const fragment of fragments) {
const fragmentWrapper = document.createElement("div")
fragmentWrapper.className = "doxygen-awesome-fragment-wrapper"
const fragmentCopyButton = document.createElement("doxygen-awesome-fragment-copy-button")
fragmentCopyButton.innerHTML = DoxygenAwesomeFragmentCopyButton.copyIcon
fragmentCopyButton.title = DoxygenAwesomeFragmentCopyButton.title

fragment.parentNode.replaceChild(fragmentWrapper, fragment)
fragmentWrapper.appendChild(fragment)
fragmentWrapper.appendChild(fragmentCopyButton)

}
}
})
})
}


copyContent() {
const content = this.previousSibling.cloneNode(true)
// filter out line number from file listings
content.querySelectorAll(".lineno, .ttc").forEach((node) => {
node.remove()
})
let textContent = content.textContent
// remove trailing newlines that appear in file listings
let numberOfTrailingNewlines = 0
while(textContent.charAt(textContent.length - (numberOfTrailingNewlines + 1)) == '\n') {
numberOfTrailingNewlines++;
}
textContent = textContent.substring(0, textContent.length - numberOfTrailingNewlines)
navigator.clipboard.writeText(textContent);
this.classList.add("success")
this.innerHTML = DoxygenAwesomeFragmentCopyButton.successIcon
window.setTimeout(() => {
this.classList.remove("success")
this.innerHTML = DoxygenAwesomeFragmentCopyButton.copyIcon
}, DoxygenAwesomeFragmentCopyButton.successDuration);
}
}

customElements.define("doxygen-awesome-fragment-copy-button", DoxygenAwesomeFragmentCopyButton)
Original file line number Diff line number Diff line change
@@ -0,0 +1,81 @@
/**
Doxygen Awesome
https://github.com/jothepro/doxygen-awesome-css
MIT License
Copyright (c) 2022 - 2023 jothepro
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction, including without limitation the rights
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
copies of the Software, and to permit persons to whom the Software is
furnished to do so, subject to the following conditions:
The above copyright notice and this permission notice shall be included in all
copies or substantial portions of the Software.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
SOFTWARE.
*/

class DoxygenAwesomeInteractiveToc {
static topOffset = 38
static hideMobileMenu = true
static headers = []

static init() {
window.addEventListener("load", () => {
let toc = document.querySelector(".contents > .toc")
if(toc) {
toc.classList.add("interactive")
if(!DoxygenAwesomeInteractiveToc.hideMobileMenu) {
toc.classList.add("open")
}
document.querySelector(".contents > .toc > h3")?.addEventListener("click", () => {
if(toc.classList.contains("open")) {
toc.classList.remove("open")
} else {
toc.classList.add("open")
}
})

document.querySelectorAll(".contents > .toc > ul a").forEach((node) => {
let id = node.getAttribute("href").substring(1)
DoxygenAwesomeInteractiveToc.headers.push({
node: node,
headerNode: document.getElementById(id)
})

document.getElementById("doc-content")?.addEventListener("scroll", () => {
DoxygenAwesomeInteractiveToc.update()
})
})
DoxygenAwesomeInteractiveToc.update()
}
})
}

static update() {
let active = DoxygenAwesomeInteractiveToc.headers[0]?.node
DoxygenAwesomeInteractiveToc.headers.forEach((header) => {
let position = header.headerNode.getBoundingClientRect().top
header.node.classList.remove("active")
header.node.classList.remove("aboveActive")
if(position < DoxygenAwesomeInteractiveToc.topOffset) {
active = header.node
active?.classList.add("aboveActive")
}
})
active?.classList.add("active")
active?.classList.remove("aboveActive")
}
}
Original file line number Diff line number Diff line change
@@ -0,0 +1,51 @@
/**
Doxygen Awesome
https://github.com/jothepro/doxygen-awesome-css
MIT License
Copyright (c) 2022 - 2023 jothepro
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction, including without limitation the rights
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
copies of the Software, and to permit persons to whom the Software is
furnished to do so, subject to the following conditions:
The above copyright notice and this permission notice shall be included in all
copies or substantial portions of the Software.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
SOFTWARE.
*/

class DoxygenAwesomeParagraphLink {
// Icon from https://fonts.google.com/icons
// Licensed under the Apache 2.0 license:
// https://www.apache.org/licenses/LICENSE-2.0.html
static icon = `<svg xmlns="http://www.w3.org/2000/svg" height="20px" viewBox="0 0 24 24" width="20px"><path d="M0 0h24v24H0V0z" fill="none"/><path d="M17 7h-4v2h4c1.65 0 3 1.35 3 3s-1.35 3-3 3h-4v2h4c2.76 0 5-2.24 5-5s-2.24-5-5-5zm-6 8H7c-1.65 0-3-1.35-3-3s1.35-3 3-3h4V7H7c-2.76 0-5 2.24-5 5s2.24 5 5 5h4v-2zm-3-4h8v2H8z"/></svg>`
static title = "Permanent Link"
static init() {
$(function() {
$(document).ready(function() {
document.querySelectorAll(".contents a.anchor[id], .contents .groupheader > a[id]").forEach((node) => {
let anchorlink = document.createElement("a")
anchorlink.setAttribute("href", `#${node.getAttribute("id")}`)
anchorlink.setAttribute("title", DoxygenAwesomeParagraphLink.title)
anchorlink.classList.add("anchorlink")
node.classList.add("anchor")
anchorlink.innerHTML = DoxygenAwesomeParagraphLink.icon
node.parentElement.appendChild(anchorlink)
})
})
})
}
}
Loading

1 comment on commit 86244b8

@vercel
Copy link

@vercel vercel bot commented on 86244b8 Sep 7, 2023

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Successfully deployed to the following URLs:

hibf – ./

hibf-seqan.vercel.app
hibf.vercel.app
hibf-git-main-seqan.vercel.app

Please sign in to comment.