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Determine different variants from the haplotypes #155

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joergi-w opened this issue Sep 2, 2021 · 0 comments

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joergi-w commented Sep 2, 2021

We skip the base quality score recalibration for now.

Given the haplotype sequences.
For each potential variant site: call genotypes and score them conditionally with respect to the haplotype likelihood.

GATK documentation

joergi-w added the enhancement label

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