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33 Open 79 Closed
33 Open 79 Closed
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Issues list

Release 0.1.0
#243 opened Nov 4, 2022 by Irallia
5 tasks
Recheck TANDEM:DUPs
#224 opened Jul 20, 2022 by Irallia
@Irallia
Dependency managment
#206 opened Apr 26, 2022 by Irallia
[BENCHMARKS] Examine the calling results more closely.
#205 opened Apr 25, 2022 by Irallia
iGenVar - [BENCHMARK] Create short & long read benchmarks Epic
#197 opened Mar 7, 2022 by Irallia
@Irallia
[FEATURE] Call/Confirm SVs with read depth information
#179 opened Nov 15, 2021 by Irallia
@joshuak94
4
How do we track constant parameters? question Further information is requested
#174 opened Oct 25, 2021 by joergi-w
[BUG] Count duplications in the reference
#173 opened Oct 19, 2021 by Irallia
[FEATURE] Extend VCF output with CN (copynumber)
#172 opened Oct 19, 2021 by Irallia
[FEATURE] Call Tandem Duplications from CIGAR string
#166 opened Sep 27, 2021 by Irallia
1
@Irallia
Determine different variants from the haplotypes enhancement New feature or request
#155 opened Sep 2, 2021 by joergi-w
Re-assemble reads to the reference genome and determine haplotypes enhancement New feature or request
#154 opened Sep 2, 2021 by joergi-w
1
Read a genome enhancement New feature or request
#151 opened Sep 1, 2021 by joergi-w
@joergi-w
iGenVar - Call Duplications Epic
#144 opened Jun 22, 2021 by Irallia
1
@Irallia
[FEATURE] Call Tandem Duplications Epic
#143 opened Jun 22, 2021 by Irallia
2
@Irallia
[RELEASE EPIC] 0.1.0 Epic
#131 opened May 28, 2021 by Irallia
[TEST] Add tests for edgecases
#117 opened May 4, 2021 by eldariont
[FEATURE] Output sequence alleles in VCF
#114 opened Apr 29, 2021 by eldariont
[FEATURE] Add read pair method from Vaquita
#105 opened Apr 12, 2021 by Irallia
@Irallia
[FEATURE] Add install packages to release (Bioconda, Homebrew)
#100 opened Apr 12, 2021 by Irallia
[MISC] Copyright & License
#98 opened Apr 6, 2021 by Irallia
[MISC] Add reads from negative strand to mini example
#92 opened Mar 23, 2021 by eldariont
@Irallia
iGenVar - Add all Methods of Vaquita Epic
#84 opened Mar 15, 2021 by Irallia
3 tasks
[DOC] Create some documentation for the Vaquita workflow
#83 opened Mar 15, 2021 by Irallia
@Irallia
[DOC] Add documentation to our classes and structs. documentation Improvements or additions to documentation
#70 opened Feb 18, 2021 by Irallia
5 tasks
@eldariont
ProTip! Exclude everything labeled bug with -label:bug.