setting up workflow #1
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| name: bifrost sp cdiff workflow | |
| on: | |
| push: | |
| branches: ["main"] | |
| pull_request: | |
| branches: ["main"] | |
| repository_dispatch: # webhook event to trigger this action workflow upon push to the submodule cdiff_fbi | |
| types: | |
| - cdiff-fbi-webhook | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: ["ubuntu-latest"] | |
| python-version: ["3.11"] | |
| steps: | |
| # Step 1: Checkout repository | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| with: | |
| submodules: 'true' #Initialize and update submodules -> git submodule init && git submodule update | |
| # Step 2: Update submodule to the latest commit | |
| - name: Update submodule | |
| run: | | |
| cd bifrost_sp_cdiff/cdiff_fbi | |
| git fetch origin | |
| git checkout main # or the specific branch you want to track | |
| git pull origin main # pull the latest changes | |
| # print the latest commit of cdiff_fbi | |
| LATEST_COMMIT=$(git rev-parse HEAD) | |
| echo "Updated cdiff_fbi to latest commit: $LATEST_COMMIT" | |
| # Step 3: Set environment variables | |
| - name: Set environment variables | |
| run: | | |
| echo "BIFROST_INSTALL_DIR='${{ github.workspace }}'" >> $GITHUB_ENV | |
| # Step 4: Extract version from __init__.py and set ENV_NAME | |
| - name: Set ENV_NAME | |
| run: | | |
| VERSION=$(grep "__version__" bifrost_sp_cdiff/__init__.py | cut -d "'" -f 2) | |
| REPO_NAME=$(basename "${{ github.workspace }}") | |
| ENV_NAME="${REPO_NAME}_v${VERSION}" | |
| # Echo the ENV_NAME to the log for debugging | |
| echo "Setting ENV_NAME to: $ENV_NAME" | |
| echo "ENV_NAME=$ENV_NAME" >> $GITHUB_ENV | |
| # Step 5: Build Docker image | |
| - name: Build Docker image | |
| run: | | |
| docker build --build-arg BIFROST_DB_KEY="${{ secrets.MONGODB_ATLAS_TEST }}" --build-arg CONDA_ENV_NAME="${{ env.ENV_NAME }}" -t bifrost_sp_cdiff_image . | |
| # Step 6: Run Docker container and execute the command | |
| - name: Run Docker container | |
| run: | | |
| docker run --env BIFROST_DB_KEY="${{ secrets.MONGODB_ATLAS_TEST }}" --env CONDA_ENV_NAME="${{ env.ENV_NAME }}" bifrost_sp_cdiff_image |