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Issues list

“synteny.py assemble” obtain too many gene pairs.
#715 opened Oct 30, 2024 by ZhaoHang-bio
1
How to add a legend in python -m jcvi.graphics.landscape heatmap
#712 opened Oct 17, 2024 by ltachi11
list index out of range
#709 opened Oct 12, 2024 by lindonghuia
2
Synteny Pattern
#707 opened Sep 17, 2024 by tamim07
15
微共线性(Microsynteny)三个及以上物种比对问题
#696 opened Jul 27, 2024 by sdhzwpz
2
! LaTeX Error: File `type1ec.sty' not found.
#685 opened Jul 7, 2024 by liuqz-bot
1
报错：Segmentation fault
#683 opened Jun 29, 2024 by monica11w
python3 -m jcvi.compara.catalog ortholog这步报错
#679 opened Jun 14, 2024 by Sherry520
2
Visualization of DNA-level Collinearity Using Mummer Data
#671 opened May 24, 2024 by saltyduckegg
2
What about more than 100 Species?
#648 opened Apr 24, 2024 by Z1997B
5
Issues in Microsynteny visualization
#640 opened Apr 3, 2024 by lvyunyunSCI
1
blocks mapping to the chromosome without those blocks
#639 opened Mar 31, 2024 by 123jjhy
4
what is command for calculate ka ks ka/ks
#637 opened Mar 15, 2024 by XuewenWangUGA
1
在jcvi.graphics.synteny 这个脚本绘图，发现block阴影很淡。
#636 opened Mar 12, 2024 by yuanhuanhahahaha
Microsynteny 微共线性分析怎么修改线的颜色和粗细
#631 opened Feb 20, 2024 by isunshine-cc
Switch to using genomepy as a dependency instead of SizesFile
#628 opened Feb 19, 2024 by tanghaibao
@tanghaibao
Paralogs
#626 opened Feb 9, 2024 by romseg
Karyotype "Error: some genes in blocks can't be found, please rerun after making sure that bed file agree with simple file."
#621 opened Jan 20, 2024 by jmpolinski
2
Issue with using jcvi in google colab
#619 opened Jan 2, 2024 by whisperingkahuna
@tanghaibao
3
AttributeError: 'LayoutLine' object has no attribute 'color
#616 opened Dec 15, 2023 by mixle18
Create the input file for MSTMap
#613 opened Nov 30, 2023 by Marije179
How to use genetic map (markers.csv) file to scafold a haplotype phased assembly from contig level to pseudochromosome level.
#604 opened Oct 12, 2023 by ap1438
5
--iter=2 flag in jcvi.compara.synteny mcscan doesnot provide any additional regions !
#584 opened Aug 2, 2023 by UpalabdhaD
1
When inputing parts of genes, gene SGR00005418.1 could not find anchors in another species
#566 opened May 10, 2023 by YANGMEI0127
2
--genelabels= won't work.
#558 opened Apr 7, 2023 by lczqd
5
ProTip! Adding no:label will show everything without a label.