remove exit 1 because it's causing task to fail

theiagen · Oct 21, 2024 · 5bcb25b · 5bcb25b
1 parent 365837e
commit 5bcb25b
Showing 1 changed file with 0 additions and 2 deletions.
diff --git a/tasks/assembly/task_metaspades.wdl b/tasks/assembly/task_metaspades.wdl
@@ -32,12 +32,10 @@ task metaspades_pe {
       if [ ! -s ~{samplename}_contigs.fasta ]; then
         tee "Metaspades produced an empty assembly for ~{samplename}" > WARNING
         rm -f ~{samplename}_contigs.fasta
-        exit 1
       fi
     
     else
       tee "Metaspades failed to assemble for ~{samplename}" > WARNING
-      exit 1
     fi
 
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