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GHA for TheiaCoV_Illumina_PE/_SE #119

Merged
merged 15 commits into from
Jul 19, 2023
Merged

GHA for TheiaCoV_Illumina_PE/_SE #119

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cdc70a7
change type and readd tests
sage-wright Jul 17, 2023
8803e70
SE tests
sage-wright Jul 18, 2023
c878407
pe test
sage-wright Jul 18, 2023
20b91d5
fix typos
sage-wright Jul 18, 2023
4d76866
missing comma!
sage-wright Jul 18, 2023
94214ed
it was quotations this time
sage-wright Jul 18, 2023
900ecba
another quote!!
sage-wright Jul 18, 2023
323808d
more quotes missing :(
sage-wright Jul 18, 2023
68fe3ae
silly typo
sage-wright Jul 18, 2023
bd3076b
remaining issues
sage-wright Jul 18, 2023
e53b862
trying to retrigger gha
sage-wright Jul 18, 2023
5e6fcf9
Merge branch 'main' into smw-gha-dev
Jul 19, 2023
dbd23c1
remove miniwdl exclusion
Jul 19, 2023
ba7a0dc
update md5sums for nextclade
sage-wright Jul 19, 2023
903f272
update nextclade se
sage-wright Jul 19, 2023
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5 changes: 0 additions & 5 deletions .github/workflows/pytest-workflows.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -38,11 +38,6 @@ jobs:
# For every workflow, test it with MiniWDL and Cromwell
tag: ["${{ fromJson(needs.changes.outputs.workflows) }}"]
engine: ["miniwdl", "cromwell"]
exclude:
- tag: "wf_theiacov_illumina_pe"
engine: "miniwdl"
- tag: "wf_theiacov_illumina_se"
engine: "miniwdl"
defaults:
run:
# Play nicely with miniconda
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