Skip to content
@theislab

Theis Lab

Institute of Computational Biology

Pinned Loading

  1. single-cell-tutorial single-cell-tutorial Public

    Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

    Jupyter Notebook 1.4k 466

  2. single-cell-best-practices single-cell-best-practices Public

    https://www.sc-best-practices.org

    Jupyter Notebook 804 192

  3. scvelo scvelo Public

    RNA Velocity generalized through dynamical modeling

    Python 420 104

  4. scarches scarches Public

    Reference mapping for single-cell genomics

    Jupyter Notebook 344 52

  5. cellrank cellrank Public

    CellRank: dynamics from multi-view single-cell data

    Python 354 47

  6. scib scib Public

    Benchmarking analysis of data integration tools

    Python 320 63

Repositories

Showing 10 of 214 repositories
  • regvelo Public

    inferring regulatory cellular dynamics

    theislab/regvelo’s past year of commit activity
    Python 13 BSD-3-Clause 1 1 0 Updated Dec 25, 2024
  • gh-dashboard Public

    A dashboard of everything in the theislab GitHub repository

    theislab/gh-dashboard’s past year of commit activity
    HTML 3 0 0 0 Updated Dec 24, 2024
  • archmap Public
    theislab/archmap’s past year of commit activity
    JavaScript 4 MIT 0 3 0 Updated Dec 24, 2024
  • multigrate Public

    Multigrate: multiomic data integration for single-cell genomics

    theislab/multigrate’s past year of commit activity
    Python 16 BSD-3-Clause 6 5 2 Updated Dec 23, 2024
  • troutpy Public

    Package for the analysis of Transcripts outside segmented cells in ST data

    theislab/troutpy’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 0 0 1 Updated Dec 23, 2024
  • moscot Public

    Multi-omic single-cell optimal transport tools

    theislab/moscot’s past year of commit activity
    Python 119 BSD-3-Clause 9 31 4 Updated Dec 23, 2024
  • scanpydoc Public

    Collection of Sphinx extensions similar to (but more flexible than) numpydoc

    theislab/scanpydoc’s past year of commit activity
    Python 12 GPL-3.0 6 3 1 Updated Dec 23, 2024
  • DRVI Public

    Unsupervised Deep Disentangled Representation of Single-Cell Omics

    theislab/DRVI’s past year of commit activity
    Python 34 BSD-3-Clause 3 2 1 Updated Dec 23, 2024
  • ehrdata Public

    A datastructure for EHR data

    theislab/ehrdata’s past year of commit activity
    Python 5 Apache-2.0 1 16 3 Updated Dec 23, 2024
  • anndata2ri Public

    Convert between AnnData and SingleCellExperiment

    theislab/anndata2ri’s past year of commit activity
    Python 130 GPL-3.0 16 13 1 Updated Dec 23, 2024
View all repositories

Most used topics

Loading…