Releases: theislab/scib
Releases · theislab/scib
v1.1.6
What's Changed
- Refactor LISI metrics by @mumichae in #395
- Update codecov with token by @mumichae in #407
- Use
scib.cl.cluster_optimal_resolutionin metrics wrapper by @mumichae in #405 - Use precomputed clustering by @mumichae in #406
- Update python-igraph dependency to igraph by @szhorvat in #409
- Fix lint by @mumichae in #414
- M.A might not be available, you should use M.toarray() by @Zhongzheng99 in #410
- Ensure essential packages are not detached! by @zhongzheng1999 in #402
- Skip labels before loop by @johnarevalo in #394
- Fix kBET test for 1.1.6 by @mumichae in #420
New Contributors
- @szhorvat made their first contribution in #409
- @Zhongzheng99 made their first contribution in #410
- @zhongzheng1999 made their first contribution in #402
Full Changelog: v1.1.5...v1.1.6
Contributors
szhorvat, johnarevalo, and 3 other contributors
Assets 2
v1.1.5
v1.1.4
What's Changed
- Add GPU_id param for DESC by @johnarevalo in #372
- Update documentation clustering by @mumichae in #373
- more readable PCA computation and info retrieval by @mumichae in #377
- Set names when reading LISI CSV files by @lazappi in #380
Full Changelog: v1.1.3...v1.1.4
What's Changed
- Add GPU_id param for DESC by @johnarevalo in #372
- Update documentation clustering by @mumichae in #373
- more readable PCA computation and info retrieval by @mumichae in #377
- Set names when reading LISI CSV files by @lazappi in #380
Full Changelog: v1.1.3...v1.1.4
Contributors
johnarevalo, lazappi, and mumichae
Assets 2
v1.1.3
What's Changed
- Run iso label as discussed on friday by @danielStrobl in #370
- Scale isolated label ASW by @mumichae in #371
- Fix PCA regression error for sparse matrices by @mumichae in #364
Full Changelog: v1.1.2...v1.1.3
Contributors
danielStrobl and mumichae
Assets 2
v1.1.2
Contributors
danielStrobl and mumichae
Assets 2
v1.1.1
Full Changelog: v1.1.0...v1.1.1
v1.1.0
v1.0.5
What's Changed
- Make rpy2 and anndata2ri optional by @mumichae in #339
- Fix batch silhouette bug by @mumichae in #342
- General optimised clustering function by @mumichae in #343
- Only pass max_epochs to SCVI.train if set by @scottgigante-immunai in #345
- add harmony by @adamgayoso in #317
- Fix kBET import issue by @mumichae in #350
- Update louvain to 0.8 by @scottgigante-immunai in #346
New Contributors
- @scottgigante-immunai made their first contribution in #345
Full Changelog: v1.0.4...v1.0.5
Contributors
adamgayoso, mumichae, and scottgigante-immunai
Assets 2
v1.0.4
What's Changed
- Update to scvi tools again, also scgen which now uses scvi tools by @adamgayoso in #316
- Fix scanvi bug by @mumichae in #327
- Fix deprecation warning by @mumichae in #326
- Bump rp2y dependency by @mumichae in #334
Full Changelog: v1.0.3...v1.0.4
Contributors
adamgayoso and mumichae
Assets 2
v1.0.3
What's Changed
- Add pre-commit by @MxMstrmn in #307
- Fix duplicate cols scanorama by @MxMstrmn in #306
- Fix scanorama batch reordering by @mumichae in #309
- Add option to use leiden by @scottgigante in #203
- Avoid filtering in normalization by @scottgigante in #208
New Contributors
Full Changelog: v1.0.2...v1.0.3
What's Changed
- Add pre-commit by @MxMstrmn in #307
- Fix duplicate cols scanorama by @MxMstrmn in #306
- Fix scanorama batch reordering by @mumichae in #309
- Add option to use leiden by @scottgigante in #203
- Avoid filtering in normalization by @scottgigante in #208
New Contributors
Full Changelog: v1.0.2...v1.0.3
Contributors
scottgigante, MxMstrmn, and mumichae