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13 Open 3 Closed
13 Open 3 Closed
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Issues list

biocmask: data masks for S4 objects, especially SummarizedExperiment enhancement New feature or request
#16 opened Sep 4, 2024 by mikelove
@jtlandis
tidyomics project-wide challenge: add more cross-package tutorials
#14 opened Feb 15, 2024 by mikelove
@js2264
1
plyranges: add support for min.gapwidth to reduce_ranges enhancement New feature or request
#12 opened Nov 11, 2023 by mikelove
@mikelove
1
Example of scATAC-seq pseudobulk analysis for differential accessibility testing documentation Improvements or additions to documentation
#11 opened Oct 26, 2023 by jeremymsimon
12
plyranges: facilitate adding metadata columns via join_mcols_* enhancement New feature or request good first issue Good for newcomers
#10 opened Sep 23, 2023 by mikelove
7
use pillar to add aesthetics to the columns of the tibble interface of tidySCE, tidyseurat, tidySE enhancement New feature or request
#9 opened Aug 25, 2023 by stemangiola
2
Write/teach workshop on bootRanges documentation Improvements or additions to documentation
#7 opened Aug 21, 2023 by mikelove
@Wancen
modernize tidy transcriptomics and genomics with dplyr > 1.0.0 and new tidyr enhancement New feature or request
#6 opened Aug 15, 2023 by stemangiola
1
@wvictor14 @noriakis
5
Example of ATAC-seq processing combining plyranges and tidybulk/tidySummarizedExperiment documentation Improvements or additions to documentation good first issue Good for newcomers
#1 opened Aug 15, 2023 by mikelove
@jennprk
plyranges: join_overlap but also include distance column enhancement New feature or request
#2 opened Aug 3, 2023 by mikelove
@mikelove @jennprk
1
New package idea, facilitate easily: genomic ranges |> filter_by_overlaps(window) |> plotgardener or Gviz good first issue Good for newcomers
#5 opened Jul 27, 2023 by mikelove
@nahid18
18
any of the plyranges "good-first-issue" issues documentation Improvements or additions to documentation good first issue Good for newcomers
#3 opened Jul 26, 2023 by mikelove
@nahid18 @KittJonathan
13
Speed up group_by operations in plyranges enhancement New feature or request
#4 opened Jul 21, 2023 by mikelove
@ppaxisa
38
ProTip! Follow long discussions with comments:>50.