setting the germline filter value at the top immuno level

wustl-oncology · Aug 2, 2023 · bbea07a · bbea07a
1 parent db2e609
commit bbea07a
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/definitions/immuno.wdl b/definitions/immuno.wdl
@@ -199,7 +199,7 @@ workflow immuno {
     Array[Array[String]] gatk_haplotypecaller_intervals
     Int? ploidy
     String? optitype_name
-    Float germline_filter_gnomAD_maximum_population_allele_frequency
+    Float germline_filter_gnomAD_maximum_population_allele_frequency = 0.05
 
     # --------- Phase VCF Inputs ---------------------------------------