Partition reads #20
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| name: Testing | |
| on: | |
| workflow_dispatch: | |
| branches: | |
| - main | |
| - filtering | |
| push: | |
| paths-ignore: | |
| - 'README.md' | |
| - 'LICENSE' | |
| branches: | |
| - main | |
| pull_request: | |
| paths-ignore: | |
| - 'README.md' | |
| - 'LICENSE' | |
| branches: | |
| - main | |
| env: | |
| TMPDIR: /tmp | |
| jobs: | |
| test_workflow: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repo + LFS | |
| uses: actions/checkout@v2 | |
| with: | |
| lfs: true | |
| - name: Checkout LFS files | |
| run: git lfs pull | |
| - name: Set upp conda | |
| uses: s-weigand/setup-conda@v1 | |
| - name: Install the conda environment | |
| run: conda env update -n base -f environment.yml | |
| - name: Dry-run | |
| run: | | |
| snakemake --use-conda -rpk -j 4 -n |