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Updates #6

Merged
merged 12 commits into from
Apr 23, 2024
Merged

Updates #6

merged 12 commits into from
Apr 23, 2024

Commits on Apr 23, 2024

  1. Update workflow environment

    @johnne
    johnne committed Apr 23, 2024
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  2. Add more files to gitignore

    @johnne
    johnne committed Apr 23, 2024
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  3. Remove fungi transcript url entry from config

    @johnne
    johnne committed Apr 23, 2024
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  4. Update readme with info about JGI login

    @johnne
    johnne committed Apr 23, 2024
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  5. Add bowtie2 environment

    @johnne
    johnne committed Apr 23, 2024
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  6. Minor fix to shell directive

    @johnne
    johnne committed Apr 23, 2024
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  7. Add local profile

    @johnne
    johnne committed Apr 23, 2024
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  8. Add parsing of JGI genomes and update wildcards

    @johnne
    johnne committed Apr 23, 2024
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  9. Add script for downloading transcripts

    @johnne
    johnne committed Apr 23, 2024
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  10. Add utility script to download genome listing

    @johnne
    johnne committed Apr 23, 2024
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  11. Update rules for automatic download of transcripts

    @johnne
    johnne committed Apr 23, 2024
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  12. Update input files

    @johnne
    johnne committed Apr 23, 2024
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