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SMD-Bioinformatics-Lund / bonsai-prp Public

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Improvments to resfinder and amrfinder parser#9

Merged

mhkc merged 8 commits intomasterSMD-Bioinformatics-Lund/bonsai-prp:masterfrom improve-resfinder-parserSMD-Bioinformatics-Lund/bonsai-prp:improve-resfinder-parserCopy head branch name to clipboard

Dec 12, 2023

+322-26

Conversation Commits8 (8)Checks Files changed

Commits

Commits on Dec 11, 2023

Resfinder variants records changed nt instead of codon
mhkc
committed
removed chagned from tbprofiler output
mhkc
committed
Added fields for ref_aa and alt_aa
mhkc
committed

Commits on Dec 12, 2023

Store AMR class with phenotypic info
mhkc
committed
deduplicate AMRfinder phenotypes
mhkc
committed
Updated CHANGELOG
mhkc
committed
black + isort
mhkc
committed
Fixed typo and renamed res_class -> group
mhkc
committed

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