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add mordor
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d-callan committed Mar 16, 2024
1 parent 2082553 commit 7420b04
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1 change: 1 addition & 0 deletions NAMESPACE
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Expand Up @@ -20,6 +20,7 @@ export(HMP_WGS)
export(Leishmaniasis)
export(MALED_2yr)
export(MALED_diarrhea)
export(MORDOR)
export(Malaysia_helminth)
export(MbioDataset)
export(NICU_NEC)
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30 changes: 29 additions & 1 deletion R/data.R
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Expand Up @@ -440,4 +440,32 @@
#' @source <https://microbiomedb.org/mbio/app/workspace/analyses/DS_abcf1b1d90/new/download>
#' @name Malaysia_helminth
#' @export
"Malaysia_helminth"
"Malaysia_helminth"

#' MORDOR phase 1
#'
#' The Macrolides Oraux pour Réduire les Décès avec un Oeil sur la Résistance (MORDOR) I
#' metagenome study evaluated the impact of mass azithromycin administration on the gut microbiome in children
#' 574 pediatric (preschool) participants from 30 Nigerien communities
#' Rectal swabs; 'shotgun' metagenomic sequencing of RNA.
#'
#' Website Release 32. (2023 May 30)
#'
#' @format ## `MORDOR`
#' A MbioDataset object with 10 metadata variables, 574 shotgun stool samples.
#' It contains the following collections: \cr
#' "WGS 4th level EC metagenome abundance data" \cr
#' "WGS Metagenome enzyme pathway abundance data" \cr
#' "WGS Metagenomeenzyme pathway coverage data" \cr
#' "WGS Genus" \cr
#' "WGS Species" \cr
#' "WGS Family" \cr
#' "WGS Order" \cr
#' "WGS Phylum" \cr
#' "WGS Class" \cr
#' "WGS Kingdom" \cr
#' "WGS Normalized number of taxon-specific sequence matches" \cr
#' @source <https://microbiomedb.org/mbio/app/workspace/analyses/DS_39d3629e79/new/download>
#' @name MORDOR
#' @export
"MORDOR"
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40 changes: 40 additions & 0 deletions man/MORDOR.Rd

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