nf-core CI

Important! Template update for nf-core/tools v3.0.2 #1375

Triggered via pull request October 23, 2024 11:24

jfy133

synchronize #421

nf-core-template-merge-3.0.2

Status Cancelled

Total duration 4m 20s

Artifacts –

ci.yml

on: pull_request

Choose nextflow versions to test against depending on target branch

Matrix: test

Annotations

60 errors and 17 warnings

Test pipeline: NFCORE_FUNCSCAN.test_preannotated_bgc_profile: Test pipeline: NFCORE_FUNCSCAN#L1

Assertion failed: 30 of 30 assertions failed

Test pipeline: NFCORE_FUNCSCAN.test_bgc_pyrodigal_profile: Test pipeline: NFCORE_FUNCSCAN#L1

Assertion failed: 14 of 14 assertions failed

Test pipeline: NFCORE_FUNCSCAN.test_bgc_pyrodigal_profile: Test pipeline: NFCORE_FUNCSCAN#L1

Assertion failed: 14 of 14 assertions failed

Run pipeline with test data (latest-everything | test_bgc_pyrodigal | docker)

Process completed with exit code 1.

Run pipeline with test data (latest-everything | test_bgc_pyrodigal | docker)

Process completed with exit code 1.

Test pipeline: NFCORE_FUNCSCAN.test_preannotated_profile: Test pipeline: NFCORE_FUNCSCAN#L1

Assertion failed: 25 of 28 assertions failed

Run pipeline with test data (24.04.2 | test_preannotated_bgc | docker)

Process completed with exit code 1.

Run pipeline with test data (24.04.2 | test_preannotated_bgc | docker)

Process completed with exit code 1.

Run pipeline with test data (24.04.2 | test_bgc_pyrodigal | docker)

Process completed with exit code 1.

Run pipeline with test data (24.04.2 | test_bgc_pyrodigal | docker)

Process completed with exit code 1.

Test pipeline: NFCORE_FUNCSCAN.test_taxonomy_prokka: Test pipeline: NFCORE_FUNCSCAN#L1

Assertion failed: 17 of 17 assertions failed

Test pipeline: NFCORE_FUNCSCAN.test_profile: Test pipeline: NFCORE_FUNCSCAN#L1

Assertion failed: 20 of 22 assertions failed

Test pipeline: NFCORE_FUNCSCAN.test_preannotated_profile: Test pipeline: NFCORE_FUNCSCAN#L1

Assertion failed: 25 of 28 assertions failed

Test pipeline: NFCORE_FUNCSCAN.test_preannotated_bgc_profile: Test pipeline: NFCORE_FUNCSCAN#L1

Assertion failed: 30 of 30 assertions failed

Run pipeline with test data (latest-everything | test_taxonomy_prokka | docker)

Process completed with exit code 1.

Run pipeline with test data (latest-everything | test_taxonomy_prokka | docker)

Process completed with exit code 1.

Test pipeline: NFCORE_FUNCSCAN.test_bakta_profile: Test pipeline: NFCORE_FUNCSCAN#L1

Assertion failed: 20 of 22 assertions failed

Test pipeline: NFCORE_FUNCSCAN.test_taxonomy_prokka: Test pipeline: NFCORE_FUNCSCAN#L1

Assertion failed: 17 of 17 assertions failed

Run pipeline with test data (24.04.2 | test_preannotated | docker)

Process completed with exit code 1.

Run pipeline with test data (24.04.2 | test_preannotated | docker)

Process completed with exit code 1.

Run pipeline with test data (latest-everything | test_preannotated_bgc | docker)

Process completed with exit code 1.

Run pipeline with test data (latest-everything | test_preannotated | docker)

Process completed with exit code 1.

Run pipeline with test data (latest-everything | test_preannotated_bgc | docker)

Process completed with exit code 1.

Run pipeline with test data (latest-everything | test_preannotated | docker)

Process completed with exit code 1.

Test pipeline: NFCORE_FUNCSCAN.test_taxonomy_pyrodigal: Test pipeline: NFCORE_FUNCSCAN#L1

Assertion failed: 17 of 17 assertions failed

Run pipeline with test data (latest-everything | test | docker)

Process completed with exit code 1.

Run pipeline with test data (latest-everything | test | docker)

Process completed with exit code 1.

Run pipeline with test data (24.04.2 | test_bakta | docker)

Process completed with exit code 1.

Run pipeline with test data (24.04.2 | test_bakta | docker)

Process completed with exit code 1.

Test pipeline: NFCORE_FUNCSCAN.test_bgc_prokka_profile: Test pipeline: NFCORE_FUNCSCAN#L1

Assertion failed: 14 of 14 assertions failed

Test pipeline: NFCORE_FUNCSCAN.test_prokka_profile: Test pipeline: NFCORE_FUNCSCAN#L1

Assertion failed: 20 of 22 assertions failed

Test pipeline: NFCORE_FUNCSCAN.test_prokka_profile: Test pipeline: NFCORE_FUNCSCAN#L1

Assertion failed: 20 of 22 assertions failed

Run pipeline with test data (24.04.2 | test_taxonomy_prokka | docker)

Process completed with exit code 1.

Run pipeline with test data (24.04.2 | test_taxonomy_prokka | docker)

Process completed with exit code 1.

Run pipeline with test data (24.04.2 | test_bgc_prokka | docker)

Process completed with exit code 1.

Run pipeline with test data (24.04.2 | test_bgc_prokka | docker)

Process completed with exit code 1.

Run pipeline with test data (24.04.2 | test_taxonomy_pyrodigal | docker)

Process completed with exit code 1.

Run pipeline with test data (24.04.2 | test_taxonomy_pyrodigal | docker)

Process completed with exit code 1.

Test pipeline: NFCORE_FUNCSCAN.test_bakta_profile: Test pipeline: NFCORE_FUNCSCAN#L1

Assertion failed: 20 of 22 assertions failed

Run pipeline with test data (24.04.2 | test_prokka | docker)

Process completed with exit code 1.

Run pipeline with test data (24.04.2 | test_prokka | docker)

Process completed with exit code 1.

Run pipeline with test data (latest-everything | test_prokka | docker)

Process completed with exit code 1.

Run pipeline with test data (latest-everything | test_prokka | docker)

Process completed with exit code 1.

Run pipeline with test data (latest-everything | test_bakta | docker)

Process completed with exit code 1.

Run pipeline with test data (latest-everything | test_bakta | docker)

Process completed with exit code 1.

Test pipeline: NFCORE_FUNCSCAN.test_bgc_bakta_profile: Test pipeline: NFCORE_FUNCSCAN#L1

Assertion failed: 14 of 14 assertions failed

Run pipeline with test data (24.04.2 | test_bgc_bakta | docker)

Process completed with exit code 1.

Run pipeline with test data (24.04.2 | test_bgc_bakta | docker)

Process completed with exit code 1.

Test pipeline: NFCORE_FUNCSCAN.test_nothing_profile: Test pipeline: NFCORE_FUNCSCAN#L1

Assertion failed: 3 of 3 assertions failed

Run pipeline with test data (latest-everything | test_nothing | docker)

Process completed with exit code 1.

Run pipeline with test data (latest-everything | test_nothing | docker)

Process completed with exit code 1.

Run pipeline with test data (latest-everything | test_bgc_bakta | docker)

Canceling since a higher priority waiting request for 'nf-core CI-421' exists

Run pipeline with test data (24.04.2 | test | docker)

Canceling since a higher priority waiting request for 'nf-core CI-421' exists

Test pipeline: NFCORE_FUNCSCAN.test_taxonomy_bakta: Test pipeline: NFCORE_FUNCSCAN#L1

Assertion failed: 17 of 17 assertions failed

Run pipeline with test data (latest-everything | test_bgc_prokka | docker)

Canceling since a higher priority waiting request for 'nf-core CI-421' exists

Run pipeline with test data (24.04.2 | test_nothing | docker)

Canceling since a higher priority waiting request for 'nf-core CI-421' exists

Run pipeline with test data (latest-everything | test_taxonomy_bakta | docker)

Canceling since a higher priority waiting request for 'nf-core CI-421' exists

Run pipeline with test data (24.04.2 | test_taxonomy_bakta | docker)

Canceling since a higher priority waiting request for 'nf-core CI-421' exists

Run pipeline with test data (24.04.2 | test_taxonomy_bakta | docker)

The operation was canceled.

Run pipeline with test data (latest-everything | test_taxonomy_pyrodigal | docker)

Canceling since a higher priority waiting request for 'nf-core CI-421' exists

Run pipeline with test data (latest-everything | test_bgc_pyrodigal | docker)

The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

Run pipeline with test data (24.04.2 | test_preannotated_bgc | docker)

Run pipeline with test data (24.04.2 | test_bgc_pyrodigal | docker)

Run pipeline with test data (latest-everything | test_taxonomy_prokka | docker)

Run pipeline with test data (24.04.2 | test_preannotated | docker)

Run pipeline with test data (latest-everything | test_preannotated_bgc | docker)

Run pipeline with test data (latest-everything | test_preannotated | docker)

Run pipeline with test data (latest-everything | test | docker)

Run pipeline with test data (24.04.2 | test_bakta | docker)

Run pipeline with test data (24.04.2 | test_taxonomy_prokka | docker)

Run pipeline with test data (24.04.2 | test_bgc_prokka | docker)

Run pipeline with test data (24.04.2 | test_taxonomy_pyrodigal | docker)

Run pipeline with test data (24.04.2 | test_prokka | docker)

Run pipeline with test data (latest-everything | test_prokka | docker)

Run pipeline with test data (latest-everything | test_bakta | docker)

Run pipeline with test data (24.04.2 | test_bgc_bakta | docker)

Run pipeline with test data (latest-everything | test_nothing | docker)

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Important! Template update for nf-core/tools v3.0.2 #1375

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