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242 Open 448 Closed
242 Open 448 Closed
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Issues list

Coverage and Depth calculations bug Something isn't working
#1659 opened Sep 19, 2024 by jbague
1
Wrong sample names in multiqc general table bug Something isn't working
#1658 opened Sep 19, 2024 by LouisLeNezet
2
A USER ERROR has occurred: Bad input: Sample $name is not in BAM header: [...] bug Something isn't working
#1655 opened Sep 18, 2024 by VivianRobin
6
use custom snpeff database, such as Candian.aruis bug Something isn't working
#1654 opened Sep 16, 2024 by ybdong919
12
Update the metro map with lofreq before next release
#1651 opened Sep 12, 2024 by maxulysse
Add pattern for all reference files enhancement New feature or request
#1650 opened Sep 12, 2024 by maxulysse
error when use custom reference bug Something isn't working
#1649 opened Sep 12, 2024 by ybdong919
8
variant_calling DO NOT PROCESS bug Something isn't working
#1648 opened Sep 12, 2024 by torres-HI
2
error running BQSR: cannot remove tmp file bug Something isn't working
#1645 opened Sep 4, 2024 by jdownie2389
Mutect2 error bug Something isn't working
#1644 opened Sep 4, 2024 by yannic-chen
9
Sarek How Tos
#1643 opened Sep 3, 2024 by edmundmiller
A question with hg19 bug Something isn't working
#1637 opened Aug 29, 2024 by jbague
Process execution failed due to exceeding the allocated runtime limit I do get the following error
#1634 opened Aug 27, 2024 by TILccit
AGeNT enhancement New feature or request
#1630 opened Aug 26, 2024 by RP-Bioinfo
Avoid misleading error messages concerning sample-sheets bug Something isn't working
#1629 opened Aug 26, 2024 by asp8200
2
cnvkit output files are missing bug Something isn't working
#1625 opened Aug 19, 2024 by bounlu
3
Bug introduced in 3.4.1 causes premature stop of the pipeline bug Something isn't working
#1622 opened Aug 14, 2024 by bounlu 3.5
@bounlu
GATK4_HAPLOTYPECALLER not running in parallel bug Something isn't working
#1617 opened Aug 9, 2024 by sitems
9
Restart from step variantcalling fails on haplotypecaller bug Something isn't working
#1616 opened Aug 8, 2024 by FriederikeHanssen 3.5
2
Restart from step variantcalling fails on NGScheckmate bug Something isn't working
#1615 opened Aug 8, 2024 by FriederikeHanssen 3.5
ERROR > SAREK_BAM_VARIANT_CALLING_GERMLINE (MANTA) bug Something isn't working
#1611 opened Aug 3, 2024 by kchilkert
1
CNVKIT doesn't accept *.list format interval files bug Something isn't working input validation
#1610 opened Aug 2, 2024 by cmatKhan 3.5
1
RFE: Variant decomposition enhancement New feature or request
#1609 opened Aug 1, 2024 by lbeltrame
2
cnvkit reference titling broken bug Something isn't working
#1606 opened Jul 31, 2024 by SethMagnusJarvis 3.5
Add msisensor-pro tumor-only mode enhancement New feature or request
#1599 opened Jul 17, 2024 by bounlu
@jfnavarro
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