BioJulia

All

87 repositories

BioStructures.jl
Public
A Julia package to read, write and manipulate macromolecular structures
bioinformatics biology structural-biology pdb julia protein-structure structural-bioinformatics biojulia
Julia
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Other
•22•93•7•0•Updated Oct 28, 2024Oct 28, 2024
SingleCellProjections.jl
Public
Analysis of Single Cell Expression data in Julia
Julia
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Other
•3•18•4•1•Updated Oct 27, 2024Oct 27, 2024
BioSequences.jl
Public
Biological sequences for the julia language
bioinformatics biological-sequences biojulia biology
Julia
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MIT License
•48•152•17•6•Updated Oct 26, 2024Oct 26, 2024
MemoryViews.jl
Public
Simple, low-level views into memory in Julia
Julia
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MIT License
•1•17•0•0•Updated Oct 24, 2024Oct 24, 2024
BioMakie.jl
Public
Plotting and interface tools for biology.
Julia
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MIT License
•4•56•3•11•Updated Oct 23, 2024Oct 23, 2024
FASTX.jl
Public
Parse and process FASTA and FASTQ formatted files of biological sequences.
parsing bio file-format fasta fastq-format fastq fastq-files fasta-format biojulia fasta-files
Julia
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MIT License
•20•62•4•1•Updated Oct 22, 2024Oct 22, 2024
PairwiseMappingFormat.jl
Public
Parser for the PAF format in bioinformatics
Julia
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MIT License
•0•1•0•0•Updated Oct 22, 2024Oct 22, 2024
Automa.jl
Public
A julia code generator for regular expressions
regular-expression julia
Julia
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Other
•15•188•9•0•Updated Oct 18, 2024Oct 18, 2024
XAMAuxData.jl
Public
Read auxiliary data fields in SAM, GFA and PAF formats
Julia
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MIT License
•0•0•0•1•Updated Oct 18, 2024Oct 18, 2024
GenomicAnnotations.jl
Public
bioinformatics biology julia genome-annotation gff3 genbank genes
Julia
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MIT License
•4•14•1•0•Updated Oct 17, 2024Oct 17, 2024
NCBIBlast.jl
Public
Thin wrapper around NCBI's BLAST+ CLI https://www.ncbi.nlm.nih.gov/books/NBK569856/
Julia
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MIT License
•2•6•1•1•Updated Oct 15, 2024Oct 15, 2024
BioMarkovChains.jl
Public
Representing biological sequences as Markov chains
bioinformatics biology julia markov-chain dna julialang
Julia
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MIT License
•2•7•0•0•Updated Oct 14, 2024Oct 14, 2024
BioTools.jl
Public archive
DEPRECATED Interfaces to common external biological tools from julia scripts and programs
Julia
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MIT License
•7•14•0•0•Updated Oct 8, 2024Oct 8, 2024
GenomicFeatures.jl
Public
Tools for genomic features in Julia.
Julia
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Other
•13•32•4•0•Updated Oct 1, 2024Oct 1, 2024
BioAlignments.jl
Public
Sequence alignment tools
bam-files bioinformatics biology high-throughput-sequencing dna-sequences sequence-alignment sequence-analysis smith-waterman-alignment sam-files biojulia
Julia
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MIT License
•24•60•22•1•Updated Aug 7, 2024Aug 7, 2024
CIGARStrings.jl
Public
Read and write Concise Idiosyncratic Gapped Alignment Reports.
Julia
•0•0•0•0•Updated Aug 1, 2024Aug 1, 2024
BED.jl
Public
bioinformatics bed-format
Julia
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MIT License
•5•6•3•2•Updated Jul 31, 2024Jul 31, 2024
XAM.jl
Public
Parse and process SAM and BAM formatted files
bam-files bioinformatics sam bam sam-files sam-format bam-format biojulia
Julia
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MIT License
•13•27•22•5•Updated Jul 30, 2024Jul 30, 2024
MMTF.jl
Public
A Julia package to read and write MMTF files
bioinformatics pdb julia-package mmtf rcsb
Julia
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MIT License
•4•8•0•0•Updated Jul 29, 2024Jul 29, 2024
ProteinSecondaryStructures.jl
Public
Wrapper to protein secondary structure calculation packages
Julia
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MIT License
•1•12•0•0•Updated Jul 11, 2024Jul 11, 2024
BioGenerics.jl
Public
Generic methods, types and modules for the BioJulia ecosystem.
Julia
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MIT License
•4•12•2•1•Updated Jul 11, 2024Jul 11, 2024
BioJuliaTemplate.jl
Public
Template package for BioJulia
Julia
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MIT License
•0•0•0•0•Updated Jun 24, 2024Jun 24, 2024
FormatSpecimens.jl
Public
Biological file format specimens for testing packages, and functions to assist in testing.
Julia
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Other
•3•13•0•0•Updated Jun 24, 2024Jun 24, 2024
BioSymbols.jl
Public
Nucleic and amino acid primitive types
bioinformatics computational-biology biological-data-analysis amino-acids nucleotides nucleic-acids biojulia biology
Julia
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MIT License
•14•30•3•2•Updated Jun 23, 2024Jun 23, 2024
biojulia.github.io
Public
BioJulia's Website
HTML
•5•7•5•2•Updated Apr 26, 2024Apr 26, 2024
GFF3.jl
Public
bioinformatics gff3-files gff3-format gff3
Julia
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MIT License
•5•12•4•1•Updated Apr 5, 2024Apr 5, 2024
Kmers.jl
Public
In development: Kmer types and methods for julia
Julia
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MIT License
•7•21•7•2•Updated Jan 2, 2024Jan 2, 2024
BioJuliaDocs
Public
Julia
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MIT License
•2•5•2•1•Updated Nov 8, 2023Nov 8, 2023
Bio.jl
Public archive
[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia
bioinformatics genomics biology deprecated dna biojulia biojulia-packages
Julia
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MIT License
•63•261•0•0•Updated Aug 26, 2023Aug 26, 2023
Contributing
Public
Documentation, guidelines, and policy on contributing to all BioJulia repositories
MIT License
•7•15•0•0•Updated Aug 17, 2023Aug 17, 2023