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Welcome to the RLM documentation!

RLM offers fast and scalable processing of bisulfite converted sequence alignments in order to compute read-level methylation statistics. The Wiki describes input and output files, the idea behind the implementation and offers some suggestions for post-processing. When looking for the right scores to use and their interpretation, you can find more information in the respective publications (linked at the output format page) or in this detailed comparison by Scherer et al..

About

• Implementation of RLM
• Input requirements and suggestions
• Output formats
• Post-processing and use cases