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This repository has been archived by the owner on May 27, 2024. It is now read-only.

Solve model.cond with custom materializer #36

Merged
merged 38 commits into from
May 18, 2024
Merged

Solve model.cond with custom materializer #36

merged 38 commits into from
May 18, 2024

Commits on Feb 26, 2024

  1. Stub custom materializer

    @grst
    grst committed Feb 26, 2024
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  2. Stub materializer factory

    @grst
    grst committed Feb 26, 2024
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  3. Setup basic factor metadata registry

    @grst
    grst committed Feb 26, 2024
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  4. Record all required attributes

    @grst
    grst committed Feb 26, 2024
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  5. Implement variable2term

    @grst
    grst committed Feb 26, 2024
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Commits on Feb 27, 2024

  1. Reimplement model.cond using factor_metadata_storage

    @grst
    grst committed Feb 27, 2024
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Commits on Mar 13, 2024

  1. Merge remote-tracking branch 'origin/main' into custom-materializer

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    grst committed Mar 13, 2024
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Commits on Apr 2, 2024

  1. Merge remote-tracking branch 'origin/main' into custom-materializer

    @grst
    grst committed Apr 2, 2024
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  2. Cleanup after merge

    @grst
    grst committed Apr 2, 2024
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  3. stub test cases

    @grst
    grst committed Apr 2, 2024
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  4. WIP: deal with custom encoder classes

    @grst
    grst committed Apr 2, 2024
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  5. WIP stub testcase

    @grst
    grst committed Apr 2, 2024
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  6. Add testcases for custom materializer

    @grst
    grst committed Apr 2, 2024
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  7. Update docstring for linear model base

    @grst
    grst committed Apr 2, 2024
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  8. WIP reimplement model.cond

    @grst
    grst committed Apr 2, 2024
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  9. Stub testcase for model.cond

    @grst
    grst committed Apr 2, 2024
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  10. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
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    pre-commit-ci[bot] committed Apr 2, 2024
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Commits on Apr 3, 2024

  1. Fix that contrasts couldn't be build from model spec

    @grst
    grst committed Apr 3, 2024
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  2. Fix edgeR type hints

    @grst
    grst committed Apr 3, 2024
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  3. Fix pydeseq2 function signatures

    @grst
    grst committed Apr 3, 2024
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  4. Fix edgeR tests

    @grst
    grst committed Apr 3, 2024
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  5. Fix model.cond term iteration

    @grst
    grst committed Apr 3, 2024
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  6. Get rid of class variable stuff

    @grst
    grst committed Apr 3, 2024
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Commits on Apr 9, 2024

  1. Account for multiple factors being generated

    @grst
    grst committed Apr 9, 2024
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  2. only fail cond if variable is ambiguous

    @grst
    grst committed Apr 9, 2024
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  3. Update comments

    @grst
    grst committed Apr 9, 2024
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  4. Add test for resolve ambiguous

    @grst
    grst committed Apr 9, 2024
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Commits on Apr 11, 2024

  1. Add more test cases and fix others

    @grst
    grst committed Apr 11, 2024
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  2. Use mapping variable -> factor instead of variable -> term

    @grst
    grst committed Apr 11, 2024
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  3. Fix remaining model.cond testcases

    @grst
    grst committed Apr 11, 2024
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  4. Fix formulaic testcase

    @grst
    grst committed Apr 11, 2024
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  5. Reset example notebook

    @grst
    grst committed Apr 11, 2024
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  6. Restet conftest

    @grst
    grst committed Apr 11, 2024
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  7. Refactor

    @grst
    grst committed Apr 11, 2024
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Commits on Apr 12, 2024

  1. Add formulaic glossary

    @grst
    grst committed Apr 12, 2024
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  2. Fix typo

    @Zethson
    Zethson authored Apr 12, 2024
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  3. Fix typo

    @Zethson
    Zethson authored Apr 12, 2024
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Commits on Apr 18, 2024

  1. Update src/multi_condition_comparisions/methods/_base.py 

    Co-authored-by: Ilan Gold <[email protected]>
    @grst @ilan-gold
    grst and ilan-gold authored Apr 18, 2024
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