Implement Decipher model in external #3015
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Codecov ReportAttention: Patch coverage is
Additional details and impacted files@@ Coverage Diff @@
## main #3015 +/- ##
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- Coverage 84.81% 84.55% -0.26%
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Files 173 178 +5
Lines 14793 15057 +264
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+ Hits 12547 12732 +185
- Misses 2246 2325 +79
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Not sure why the cuda tests are failing on import of the Decipher class. Any ideas? @canergen @ori-kron-wis |
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CC @ANazaret
Implements Decipher model (https://github.com/azizilab/decipher, https://www.biorxiv.org/content/10.1101/2023.11.11.566719v1) into external/
For now, it only includes base implementation without many of the downstream workflows from the original implementation.
Includes minor non-breaking changes to the
LowLevelPyroTrainingPlan.Test: was able to approximately reproduce figures from the tutorial (https://github.com/azizilab/decipher/blob/main/examples/1-tutorial.ipynb), some of the v plots for several random seeds below:
Original implementation:
New implementation:
