Manual GUI

Manual sorting GUI

• See manual_() for functional description
• Video tutorial on Youtube

Mouse command

• Pan: move the mouse while holding down the wheel button
• Zoom: use the mouse wheel
• Left-click: select a unit on the waveform view
• Right-click: select a unit on the waveform view to compare with (red cursor)

Keyboard

• Press 'h' to display the keyboard shortcuts for each views

Menu (waveform view)

File

• Save: Save a current program state to _jrc.mat file
• Save figures as .fig: Save all windows to .fig file (Matlab figure file)
• Save figures as .png: Save all windows to .png file (image file)
• Describe: Describe the current clustering
• Edit prm file: Edit the currently selected .prm file
• Reload prm file: Reload the currently selected .prm file after manual editing
• Export units to csv: Export the clustering output to .csv file.
• Export unit qualities to csv: Export unit qualities to _quality.csv file. Equivalent to jrc export-quality
• Export all mean unit waveforms: Export average waveforms for all units to the Matlab Workspace
• Export selected mean unit waveforms: Export average waveforms for all units to the Matlab Workspace
• Export all waveforms from the selected unit: Export spike waveforms from a selected unit to the Matlab Workspace
• Export firing rate for all units: Export firing rate for all units to the Matlab Workspace
• Exit: Exit program

Edit

• Merge: Merge two selected units. Select the first unit by left-click (black) and the second unit by right-click (red)
• Merge auto: Automatically merge units based on the waveform correlation threshold provided by a user.
• Delete: Delete a selected unit
• Delete auto: Delete units based on the number of spikes or SNR
• Split: Automatically split a unit to two units using k-means. Three PCA scores are computed using waveforms from multiple channels.
• Auto split max-chan: Automatically split a unit to two units using k-means. Three PCA scores are computed using a peak channel waveform only.
• Auto split multi-chan: Same as Split
• Annotate: Annotate a unit

View

• Show traces: Display raw traces (opens a new window, equivalent to jrc traces command)
• View all: Show all units in the waveform view
• Zoom selected: Zoom to a currently selected unit in the waveform view
• Waveform (toggle): Show or hide individual spike waveforms shown as grey (randomly selected up to nSpk_show)
• Numbers (toggle): Show or hide number of spikes per unit on the x-axis of the waveform view
• Show raw waveform: Display raw unit waveforms on the waveform view
• Reset window positions: Reset all window positions to the initial state

Projection

• vpp: Use peak-to-peak voltage for the time and projection plots
• pca: Use PCA for the time and projection plots

Plot

• All unit firing rate vs. aux. input: Correlation plot for all unit firing rates vs. analog input channel
• Selected unit firing rate vs. aux. input: Correlation plot for a selected unit firing rates vs. analog input channel

Unit (label and annotate a unit)

• Annotate unit: Annotate a selected unit with a custom tag
• single: Tag a selected unit as single unit
• multi: Tag a selected unit as multi unit
• noise: Tag a selected unit as noise unit
• clear annotation: Clear the annotation for a selected unit
• equal to: Annotate which unit is equal to the selected unit

History

• Select a program state to revert to (5 histories kept by default as specified by MAX_LOG paramter)

Help

• Help: Display help menu
• Wiki on Github: Go to the JRCLUST Github wiki page
• About: Show current JRCLUST version info
• Post an issue on GitHub: Post an issue on JRCLUST GitHub
• Search issues on GitHub: Search for an issue on JRCLUST GitHub