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Preview GUI
jamesjun edited this page Nov 3, 2017
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jrc gui
- Save to .prm file: Update chosen settings to .prm file
- [E]xport to workspace: Export traces to the Matlab workspace
- Save spike detection threshold: Save spike detection threshold per channel to apply constant threshold across time. It sets P.vcFile_thresh file, which stores the spike detection threshold for each channel.
- Bad site threshold: Automatically detect bad-site threshold that is below P.thresh_corr_bad_site (0-1).
- Spike detection threshold: Uses P.qqFactor setting.
- Filter mode: Uses P.vcFilter setting. Select from below:
- ndiff: 2n-point Differentiator filter determined by P.nDiff_filt parameter
- bandpass: Savitzky-Golay differentiator filter determined by P.nDiff_filt parameter
- sgdiff: Savitzky-Golay differentiator filter determined by P.nDiff_filt parameter
- fir1: Finite Impulse Response filter fir1.m determined by P.freqLim parameter
- user: User-specified filter.
- Reference mode: Select from below:
- none: no reference signals are subtracted
- mean: mean across sites are subtracted from each site (excluding bad sites)
- median: median across sites are subtracted from each site
- Common reference threshold
- FFT cleanup threshold: 0 to disable; 10 (recommended, MAD unit) if you see significant narrow-band noise contaminations
- Display time range (s): Specify the time duration to display.
- Display site range: Specify the range of site numbers to display.
- Show raw traces [F]: Toggles between "filtered" and "raw" traces. Keyboard shortcut: 'F'.
- Show spike [T]hreshold: Show the spike threshold as a dashed magenta line for each channel.
- Hide [S]pikes: Toggles between "Show" and "Hide" spikes. Keyboard shortcut: 'S'.
- Hide [G]rid: Toggles between "Show" and "Hide" grids. Keyboard shortcut: 'G'.
- Site view: Select from below:
- Site correlation
- Spike threshold
- Event rate (Hz)
- Event SNR (median)
- Reference view: Select from below:
- original
- binned
- Frequency scale: Select from below:
- Linear
- Log
Home
JRCLUST pipeline
Performance benchmark
Step-by-step tutorial
Video tutorials
Command line interface
Requirements and Installation
Tetrodes sorting
Command listing
Code listing
Function listing
Main GUI
Preview GUI
Probe GUI
Traces GUI
Manual GUI
PSTH view
Input and output files
Probe file
Batch file
Supported recording format
User configuration file
Combining multiple files
Generating trial files
Master struct (S0)
Parameters struct (P)
Cluster struct (S_clu)
Global variables
Variable naming convention