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Issues list

java.lang.OutOfMemoryError: Java heap space with FastQC bug Something isn't working
#283 opened Oct 30, 2024 by jlandry69
Nanoseq Pipeline Fails at Bambu Process with java.lang.Boolean Error
#279 opened Oct 7, 2024 by xeniaroda
Different Chromosome counts between samtools and bambu bug Something isn't working
#278 opened Oct 1, 2024 by fbndr98
FILTER 'STRANDBIAS' is not defined in the header bug Something isn't working
#276 opened Sep 17, 2024 by mazzalab
Failed to run medaka consensus bug Something isn't working
#275 opened Sep 17, 2024 by mazzalab
Command in stage minimap2_transcriptome failed with exit status = 127 bug Something isn't working
#271 opened Aug 30, 2024 by rajithadp
ERROR ~ Error executing process > 'NFCORE_NANOSEQ:NANOSEQ:INPUT_CHECK:SAMPLESHEET_CHECK (sequences_inputNB.csv)' bug Something isn't working
#270 opened Jul 23, 2024 by Jordthomas93
SNIFFLES_SORT_VCF return an error due to mkdtemp bug Something isn't working
#269 opened May 28, 2024 by samuelecancellieri
Stringtie and featurecounts results: counts_gene.txt has more rows than counts_transcript.txt bug Something isn't working
#265 opened Apr 19, 2024 by CHENAO-QIAN
pipeline terminating early bug Something isn't working
#264 opened Mar 13, 2024 by nick-youngblut
2
Pulling biocontainers:v1.2.0_cv1 Singularity image fails bug Something isn't working
#257 opened Oct 30, 2023 by pcrxn
3
Pairing between sample and genome is ignored for demultiplexed reads (cDNA mode) bug Something isn't working
#254 opened Aug 31, 2023 by nschan
2
modular version of the DNA protocol enhancement New feature or request
#252 opened Jul 27, 2023 by mvheetve
Process NFCORE_NANOSEQ:NANOSEQ:QCFASTQ_NANOPLOT_FASTQC:NANOPLOT (23046_LEC_R1) terminated with an error exit status (2) bug Something isn't working
#250 opened Jun 12, 2023 by gzentner
5
Add dorado as the basecaller enhancement New feature or request
#249 opened Jun 8, 2023 by bounlu
2
JAFFA error using docker in nf-core/nanoseq version 3.0.0 and 3.1.0 bug Something isn't working
#240 opened May 6, 2023 by criphg
8
JAFFAL pipeline crashes when singularity is used bug Something isn't working
#239 opened May 4, 2023 by marcDabad
5
Update m6anet to version 2 enhancement New feature or request
#237 opened Apr 24, 2023 by matthewstuartedwards
Parallelize nanopolish eventalign enhancement New feature or request
#236 opened Apr 23, 2023 by matthewstuartedwards
No profile for Apptainer (Singularity successor) enhancement New feature or request
#235 opened Apr 5, 2023 by paulmenzel
MultiQC report not triggered by FastQC input bug Something isn't working
#234 opened Mar 24, 2023 by ktrappe
Nanoplot output files clobber each other .. bug Something isn't working
#233 opened Mar 23, 2023 by benbfly
4
Nanopolish does not include the required HDF5 plugin and/or VBZ decompression bug Something isn't working
#231 opened Mar 17, 2023 by Eric-CH-Chen
7
To include profile "test" directRNA programs enhancement New feature or request
#230 opened Mar 16, 2023 by Eric-CH-Chen
make pycoQC run without basecalling/demultiplexing enhancement New feature or request
#199 opened Oct 19, 2022 by FranBonath
ProTip! Exclude everything labeled bug with -label:bug.